core::fragment::MinimalFragSet Member List

This is the complete list of members for core::fragment::MinimalFragSet, including all inherited members.

add(FrameCOP aFrame)	core::fragment::FragSet
add(FrameList const &frames)	core::fragment::FragSet
add(FragSet const &frames)	core::fragment::FragSet
add(FragID const &)	core::fragment::FragSet
add(FragID_List &list)	core::fragment::FragSet	inline
add_(FrameOP aframe) override	core::fragment::MinimalFragSet	protectedvirtual
begin() const override	core::fragment::MinimalFragSet	virtual
clone() const override	core::fragment::MinimalFragSet	virtual
clone_shifted(int) const	core::fragment::FragSet
empty() const override	core::fragment::MinimalFragSet	virtual
empty_clone() const override	core::fragment::MinimalFragSet	virtual
end() const override	core::fragment::MinimalFragSet	virtual
FragSet()	core::fragment::FragSet	inline
FrameMap typedef	core::fragment::MinimalFragSet
frames(Size pos, FrameList &frames) const override	core::fragment::MinimalFragSet	virtual
frames_	core::fragment::MinimalFragSet	private
generate_insert_map(kinematics::MoveMap const &mm, InsertMap &insert_map, InsertSize &insert_size) const	core::fragment::FragSet	virtual
global_offset() const	core::fragment::FragSet	inline
global_offset(int)	core::fragment::FragSet
insert_fragID_list(FragID_List &list)	core::fragment::FragSet
max_frag_length() const	core::fragment::FragSet	inline
max_pos() const	core::fragment::FragSet	inline
min_pos() const	core::fragment::FragSet	inline
MinimalFragSet()	core::fragment::MinimalFragSet
nonconst_begin() override	core::fragment::MinimalFragSet	virtual
nonconst_end() override	core::fragment::MinimalFragSet	virtual
nr_frames() const	core::fragment::FragSet
overlapping_with_region(kinematics::MoveMap const &mm, core::Size start, core::Size end, core::Size min_overlap, core::Size min_length, FrameList &frames) const	core::fragment::FragSet	virtual
Parent typedef	core::fragment::MinimalFragSet
read_fragment_file(std::string filename, Size top25=0, Size ncopies=1)	core::fragment::MinimalFragSet
read_fragment_stream(std::string const &filename, std::string const &first_line, std::istream &data, Size top25=0, Size ncopies=1)	core::fragment::MinimalFragSet
region(kinematics::MoveMap const &mm, core::Size start, core::Size end, core::Size, core::Size, FrameList &frames) const override	core::fragment::MinimalFragSet	virtual
region_all(core::Size start, core::Size end, core::Size min_overlap, core::Size min_length, FrameList &frames) const	core::fragment::FragSet	virtual
region_simple(core::Size start, core::Size end, FrameList &frames) const	core::fragment::FragSet	inlinevirtual
set_max_frag_length(Size setting)	core::fragment::FragSet	inlineprotected
set_max_pos(Size pos)	core::fragment::FragSet	inlineprotected
set_min_pos(Size pos)	core::fragment::FragSet	inlineprotected
shift_by(int offset)	core::fragment::FragSet	virtual
size() const	core::fragment::FragSet
~FragSet() override=default	core::fragment::FragSet
~MinimalFragSet() override	core::fragment::MinimalFragSet