protocols::sewing::movers::LigandBindingAssemblyMover Member List

This is the complete list of members for protocols::sewing::movers::LigandBindingAssemblyMover, including all inherited members.

add_motif_scorers_to_score_file(core::pose::Pose &pose, data_storage::SmartAssemblyOP &assembly) override	protocols::sewing::movers::LigandBindingAssemblyMover	virtual
add_requirement(requirements::AssemblyRequirementOP requirement)	protocols::sewing::movers::AssemblyMover
add_scorer(scoring::AssemblyScorerOP scorer)	protocols::sewing::movers::AssemblyMover	virtual
alignment_settings()	protocols::sewing::movers::AppendAssemblyMover	protected
AppendAssemblyMover()	protocols::sewing::movers::AppendAssemblyMover
AppendAssemblyMover(AppendAssemblyMover const &src)	protocols::sewing::movers::AppendAssemblyMover
apply(core::pose::Pose &pose) override	protocols::sewing::movers::LigandBindingAssemblyMover	virtual
assembly_meets_requirements(data_storage::SmartAssemblyOP assembly)	protocols::sewing::movers::AssemblyMover
assembly_mover_subtag_ct_namer(std::string)	protocols::sewing::movers::AssemblyMover	static
AssemblyMover()	protocols::sewing::movers::AssemblyMover
AssemblyMover(AssemblyMover const &src)	protocols::sewing::movers::AssemblyMover
attributes_for_append_assembly_mover(utility::tag::AttributeList &attributes)	protocols::sewing::movers::AppendAssemblyMover	static
binder_finders_	protocols::sewing::movers::LigandBindingAssemblyMover	private
binding_cycles_	protocols::sewing::movers::LigandBindingAssemblyMover	private
build_site_only_	protocols::sewing::movers::LigandBindingAssemblyMover	private
class_name()	protocols::sewing::movers::LigandBindingAssemblyMover	static
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::sewing::movers::LigandBindingAssemblyMover	virtual
create()	protocols::moves::Mover	virtual
define_generic_assembly_mover_attributes(utility::tag::AttributeList &)	protocols::sewing::movers::AssemblyMover	static
distance_cutoff_	protocols::sewing::movers::LigandBindingAssemblyMover	private
expanded_ligands_	protocols::sewing::movers::LigandBindingAssemblyMover	private
find_starting_segment(data_storage::SmartAssemblyOP assembly)	protocols::sewing::movers::AppendAssemblyMover	virtual
fresh_instance() const override	protocols::sewing::movers::LigandBindingAssemblyMover	virtual
generate_assembly(data_storage::SmartAssemblyOP, core::pose::Pose &) override	protocols::sewing::movers::LigandBindingAssemblyMover	virtual
get_add_probability() const	protocols::sewing::movers::AssemblyMover
get_additional_output()	protocols::moves::Mover	virtual
get_assembly_scorers() const	protocols::sewing::movers::AssemblyMover
get_basis_map_generator() const	protocols::sewing::movers::AssemblyMover
get_binding_cycles() const	protocols::sewing::movers::LigandBindingAssemblyMover
get_build_site_only() const	protocols::sewing::movers::LigandBindingAssemblyMover
get_conformer_switch_probability() const	protocols::sewing::movers::AssemblyMover
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_delete_probability() const	protocols::sewing::movers::AssemblyMover
get_distance_cutoff() const	protocols::sewing::movers::LigandBindingAssemblyMover
get_edge_file_name() const	protocols::sewing::movers::AssemblyMover
get_edge_map_generator() const	protocols::sewing::movers::AssemblyMover
get_end_temperature() const	protocols::sewing::movers::AssemblyMover
get_extend_mode() const	protocols::sewing::movers::AppendAssemblyMover
get_hashed() const	protocols::sewing::movers::AssemblyMover
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_ligand_requirements() const	protocols::sewing::movers::LigandBindingAssemblyMover
get_ligands() const	protocols::sewing::movers::AppendAssemblyMover
get_lowest_score() const	protocols::sewing::movers::AssemblyMover
get_max_cycles() const	protocols::sewing::movers::AssemblyMover
get_max_num_segments() const	protocols::sewing::movers::AssemblyMover
get_max_segment_length() const	protocols::sewing::movers::AssemblyMover
get_min_cycles() const	protocols::sewing::movers::AssemblyMover
get_min_distance(data_storage::SmartSegmentOP, data_storage::LigandResidueOP)	protocols::sewing::movers::LigandBindingAssemblyMover
get_model_file_name() const	protocols::sewing::movers::AssemblyMover
get_modifiable_terminus() const	protocols::sewing::movers::AppendAssemblyMover
get_name() const override	protocols::sewing::movers::LigandBindingAssemblyMover	virtual
get_native_pose() const	protocols::moves::Mover
get_non_ligand_requirements() const	protocols::sewing::movers::LigandBindingAssemblyMover
get_nonconst_ligands()	protocols::sewing::movers::AppendAssemblyMover
get_output_partner() const	protocols::sewing::movers::AppendAssemblyMover
get_output_pose_count() const	protocols::sewing::movers::AssemblyMover
get_output_pose_per_move() const	protocols::sewing::movers::AssemblyMover
get_partner_pdb() const	protocols::sewing::movers::AppendAssemblyMover
get_pose_segment_dssp() const	protocols::sewing::movers::AppendAssemblyMover
get_pose_segment_ends_string() const	protocols::sewing::movers::AppendAssemblyMover
get_pose_segment_starts_string() const	protocols::sewing::movers::AppendAssemblyMover
get_recover_lowest_assembly() const	protocols::sewing::movers::AssemblyMover
get_required_resnums() const	protocols::sewing::movers::AppendAssemblyMover
get_required_selector() const	protocols::sewing::movers::AppendAssemblyMover
get_requirements() const	protocols::sewing::movers::AssemblyMover
get_segment_distance_cutoff() const	protocols::sewing::movers::LigandBindingAssemblyMover
get_segment_vector() const	protocols::sewing::movers::AssemblyMover
get_segments_from_dssp() const	protocols::sewing::movers::AppendAssemblyMover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_start_node_vital_segments() const	protocols::sewing::movers::AppendAssemblyMover
get_start_temperature() const	protocols::sewing::movers::AssemblyMover
get_strict_dssp_changes() const	protocols::sewing::movers::AppendAssemblyMover
get_type() const	protocols::moves::Mover	inline
get_unweighted_score_term(data_storage::SmartAssemblyOP, core::Size scorer_index)	protocols::sewing::movers::AssemblyMover	virtual
get_window_width() const	protocols::sewing::movers::AssemblyMover
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
ligand_requirements_	protocols::sewing::movers::LigandBindingAssemblyMover	private
LigandBindingAssemblyMover()	protocols::sewing::movers::LigandBindingAssemblyMover
LigandBindingAssemblyMover(LigandBindingAssemblyMover const &src)	protocols::sewing::movers::LigandBindingAssemblyMover
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::sewing::movers::AssemblyMover	static
name()	protocols::moves::Mover	inlinestatic
non_ligand_requirements_	protocols::sewing::movers::LigandBindingAssemblyMover	private
output_pose(data_storage::SmartAssemblyOP assembly, core::pose::Pose &)	protocols::sewing::movers::AssemblyMover
parse_assembly_scorers(utility::tag::TagCOP tag, basic::datacache::DataMap &datamap)	protocols::sewing::movers::AssemblyMover
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override	protocols::sewing::movers::LigandBindingAssemblyMover	virtual
parse_requirements(utility::tag::TagCOP tag, basic::datacache::DataMap &datamap)	protocols::sewing::movers::AssemblyMover
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
print_statistics(data_storage::SmartAssemblyOP) const	protocols::sewing::movers::AssemblyMover	virtual
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &)	protocols::sewing::movers::LigandBindingAssemblyMover	static
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
revert_score()	protocols::sewing::movers::AssemblyMover
score(data_storage::SmartAssemblyOP)	protocols::sewing::movers::AssemblyMover	virtual
segment_distance_cutoff_	protocols::sewing::movers::LigandBindingAssemblyMover	private
set_add_probability(core::Real add_probability)	protocols::sewing::movers::AssemblyMover
set_assembly_scorers(utility::vector1< scoring::AssemblyScorerOP > assembly_scorers)	protocols::sewing::movers::AssemblyMover
set_basis_map_generator(hashing::BasisMapGeneratorOP bmg)	protocols::sewing::movers::AssemblyMover
set_binding_cycles(core::Size cycles)	protocols::sewing::movers::LigandBindingAssemblyMover
set_build_site_only(bool build_only)	protocols::sewing::movers::LigandBindingAssemblyMover
set_conformer_switch_probability(core::Real prob)	protocols::sewing::movers::AssemblyMover
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_default_assembly_scorers()	protocols::sewing::movers::AssemblyMover	virtual
set_default_requirements()	protocols::sewing::movers::AssemblyMover	virtual
set_delete_probability(core::Real delete_probability)	protocols::sewing::movers::AssemblyMover
set_distance_cutoff(core::Real cutoff)	protocols::sewing::movers::LigandBindingAssemblyMover
set_edge_file_name(std::string edges)	protocols::sewing::movers::AssemblyMover
set_edge_map_generator(hashing::EdgeMapGeneratorOP emg)	protocols::sewing::movers::AssemblyMover
set_end_temperature(core::Real temp)	protocols::sewing::movers::AssemblyMover
set_extend_mode(bool)	protocols::sewing::movers::AppendAssemblyMover
set_hashed(bool hashed)	protocols::sewing::movers::AssemblyMover
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_ligand_requirements(utility::vector1< requirements::AssemblyRequirementOP > requirements)	protocols::sewing::movers::LigandBindingAssemblyMover
set_ligands(utility::vector1< data_storage::LigandDescription >)	protocols::sewing::movers::AppendAssemblyMover
set_lowest_score(core::Real lowest_score)	protocols::sewing::movers::AssemblyMover
set_max_cycles(core::Size max_cycles)	protocols::sewing::movers::AssemblyMover
set_max_num_segments(core::Size max_segs)	protocols::sewing::movers::AssemblyMover
set_max_segment_length(core::Size max_seg_length)	protocols::sewing::movers::AssemblyMover
set_min_cycles(core::Size min_cycles)	protocols::sewing::movers::AssemblyMover
set_model_file_name(std::string models)	protocols::sewing::movers::AssemblyMover
set_modifiable_terminus(char)	protocols::sewing::movers::AppendAssemblyMover
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_non_ligand_requirements(utility::vector1< requirements::AssemblyRequirementOP > requirements)	protocols::sewing::movers::LigandBindingAssemblyMover
set_output_partner(bool)	protocols::sewing::movers::AppendAssemblyMover
set_output_pose_per_move(bool output_pose_per_move)	protocols::sewing::movers::AssemblyMover
set_partner_pdb(core::pose::PoseOP)	protocols::sewing::movers::AppendAssemblyMover
set_pose_segment_dssp(std::string const &)	protocols::sewing::movers::AppendAssemblyMover
set_pose_segment_ends_string(std::string const &)	protocols::sewing::movers::AppendAssemblyMover
set_pose_segment_starts_string(std::string const &)	protocols::sewing::movers::AppendAssemblyMover
set_recover_lowest_assembly(bool)	protocols::sewing::movers::AssemblyMover
set_required_resnums(std::string)	protocols::sewing::movers::AppendAssemblyMover
set_required_selector(core::select::residue_selector::ResidueSelectorCOP)	protocols::sewing::movers::AppendAssemblyMover
set_requirements(utility::vector1< requirements::AssemblyRequirementOP > requirements)	protocols::sewing::movers::AssemblyMover
set_segment_distance_cutoff(core::Size cutoff)	protocols::sewing::movers::LigandBindingAssemblyMover
set_segment_vector(hashing::SegmentVectorCOP segvec)	protocols::sewing::movers::AssemblyMover
set_segments_from_dssp(bool)	protocols::sewing::movers::AppendAssemblyMover
set_start_node_vital_segments(std::string)	protocols::sewing::movers::AppendAssemblyMover
set_start_temperature(core::Real temp)	protocols::sewing::movers::AssemblyMover
set_strict_dssp_changes(bool)	protocols::sewing::movers::AppendAssemblyMover
set_type(std::string const &setting)	protocols::moves::Mover	inline
set_up_assembly(core::pose::Pose &pose) override	protocols::sewing::movers::LigandBindingAssemblyMover	virtual
set_up_hashing()	protocols::sewing::movers::AssemblyMover	virtual
set_window_width(core::Size width)	protocols::sewing::movers::AssemblyMover
show(std::ostream &output=std::cout) const override	protocols::sewing::movers::LigandBindingAssemblyMover	virtual
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
~AppendAssemblyMover() override=default	protocols::sewing::movers::AppendAssemblyMover
~AssemblyMover() override=default	protocols::sewing::movers::AssemblyMover
~LigandBindingAssemblyMover() override=default	protocols::sewing::movers::LigandBindingAssemblyMover