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protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions Member List

This is the complete list of members for protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions, including all inherited members.

centroid_max_temperature() const protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsinline
centroid_max_temperature_protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
centroid_min_temperature() const protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsinline
centroid_min_temperature_protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
clean_fasta_file_contents()protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
clone() const protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
do_fullatom_refinement() const protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsinline
do_fullatom_refinement_protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
fasta_file() const protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsinline
fasta_file_protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
fasta_file_contents() const protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsinline
fasta_file_contents_protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
findchar(std::string const &curstring, utility::vector1< char > const &chars) const protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
fullatom_fast_relax_rounds() const protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsinline
fullatom_fast_relax_rounds_protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
fullatom_find_disulfides() const protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsinline
fullatom_find_disulfides_protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
HelicalBundlePredictApplicationOptions()protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
helix_assignment_file() const protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsinline
helix_assignment_file_protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
helix_assignment_file_contents() const protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsinline
helix_assignment_file_contents_protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
initialize_from_options()protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
native_file() const protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsinline
native_file_protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
nstruct() const protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsinline
nstruct_protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
num_simulated_annealing_rounds_centroid() const protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsinline
num_simulated_annealing_rounds_centroid_protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
num_steps_per_simulated_annealing_round_centroid() const protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsinline
num_steps_per_simulated_annealing_round_centroid_protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
read_fasta()protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
read_helix_assignments()protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
read_inputs()protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
read_sequence_file()protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
register_options()protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsstatic
rmsd_residues_to_ignore_native() const protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsinline
rmsd_residues_to_ignore_native_protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
rmsd_residues_to_ignore_prediction() const protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsinline
rmsd_residues_to_ignore_prediction_protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
sequence_file_protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
sequence_file_contents() const protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsinline
sequence_file_contents_protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptionsprivate
set_fasta_file(std::string const &file_in)protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
set_fasta_file_contents(std::string const &contents_in)protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
set_helix_assignment_file(std::string const &file_in)protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
set_helix_assignment_file_contents(std::string const &contents_in)protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
set_rmsd_residues_to_ignore_native(utility::vector1< signed long > const &input)protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
set_rmsd_residues_to_ignore_prediction(utility::vector1< signed long > const &input)protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
set_sequence_file(std::string const &file_in)protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
set_sequence_file_contents(std::string const &contents_in)protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
~HelicalBundlePredictApplicationOptions() overrideprotocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions