SapConstraintHelper.hh File Reference

Score term that applies the RotamerPSSMConstraint as an energy. More...

#include <core/pack/guidance_scoreterms/sap/SapConstraintHelper.fwd.hh>
#include <core/pack/guidance_scoreterms/sap/SapConstraintOptions.fwd.hh>
#include <core/pack/guidance_scoreterms/sap/SapDatabase.hh>
#include <core/id/AtomID_Map.hh>
#include <core/pack_basic/RotamerSetsBase.hh>
#include <core/pack/rotamer_set/RotamerSets.hh>
#include <core/scoring/methods/ContextIndependentTwoBodyEnergy.hh>
#include <core/scoring/methods/EnergyMethodCreator.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/conformation/Residue.hh>
#include <core/select/residue_selector/ResidueSelector.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <utility/vector1.hh>
#include <utility/pointer/memory.hh>
#include <unordered_map>

Classes
struct	core::pack::guidance_scoreterms::sap::MyTemplatePointerHash1< Tval >
struct	core::pack::guidance_scoreterms::sap::RotamerRotamerHasher
class	core::pack::guidance_scoreterms::sap::SapConstraintHelper

Namespaces
	core
	A class for reading in the atom type properties.
	core::pack
	core::pack::guidance_scoreterms
	core::pack::guidance_scoreterms::sap

Macros
#define	ATOM_WITHIN_5_ELEMS   40
#define	ATOM_SASA_SCORE_ELEMS   46
#define	BAD_AA_INDEX   65535
#define	BAD_SEQPOS_INDEX   4294967295

Detailed Description

Score term that applies the RotamerPSSMConstraint as an energy.

Author

Brian Coventry (bcov@.nosp@m.uw.e.nosp@m.du)

Macro Definition Documentation

#define ATOM_SASA_SCORE_ELEMS   46

Referenced by core::pack::guidance_scoreterms::sap::SapConstraintHelper::convert_block_sasa_to_sasa_score(), core::pack::guidance_scoreterms::sap::SapConstraintHelper::fill_atom_neighbor_stuff(), and core::pack::guidance_scoreterms::sap::SapConstraintHelper::find_lightning_2b().

#define ATOM_WITHIN_5_ELEMS   40

Referenced by core::pack::guidance_scoreterms::sap::SapConstraintHelper::add_sap_data(), core::pack::guidance_scoreterms::sap::SapConstraintHelper::find_lightning_2b(), core::pack::guidance_scoreterms::sap::SapConstraintHelper::recalculate_saps(), and core::pack::guidance_scoreterms::sap::SapConstraintHelper::update_neighbors_sap().

#define BAD_AA_INDEX   65535

Referenced by core::pack::guidance_scoreterms::sap::SapConstraintHelper::lightning_1b_lookup(), core::pack::guidance_scoreterms::sap::SapConstraintHelper::lightning_2b_lookup(), and core::pack::guidance_scoreterms::sap::SapConstraintHelper::setup_lightning().

#define BAD_SEQPOS_INDEX   4294967295

Referenced by core::pack::guidance_scoreterms::sap::SapConstraintHelper::lightning_1b_lookup(), core::pack::guidance_scoreterms::sap::SapConstraintHelper::lightning_2b_lookup(), and core::pack::guidance_scoreterms::sap::SapConstraintHelper::setup_lightning().