| bestenergy() | core::pack::annealer::SimAnnealerBase | protected |
| bestrotamer_at_seqpos() | core::pack::annealer::SimAnnealerBase | protected |
| bestrotamer_at_seqpos() const | core::pack::annealer::SimAnnealerBase | protected |
| calc_freq_temp | core::pack::annealer::SimAnnealerBase | protectedstatic |
| calc_rot_freq() const | core::pack::annealer::SimAnnealerBase | protected |
| clear() | core::pack::annealer::SimAnnealerBase | protected |
| current_rot_index() | core::pack::annealer::SimAnnealerBase | protected |
| current_rot_index() const | core::pack::annealer::SimAnnealerBase | protected |
| FlexbbSimAnnealer(ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, PackerEnergy &bestenergy, bool start_with_current, interaction_graph::FlexbbInteractionGraphOP ig, rotamer_set::FlexbbRotamerSetsCOP rotsets, ObjexxFCL::FArray1D_int ¤t_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< PackerEnergy > &rot_freq) | protocols::flexpack::annealer::FlexbbSimAnnealer | |
| FlexbbSimAnnealer(const FlexbbSimAnnealer &rhs) | protocols::flexpack::annealer::FlexbbSimAnnealer | private |
| get_annealer_observer() | core::pack::annealer::SimAnnealerBase | inline |
| get_annealer_observer() const | core::pack::annealer::SimAnnealerBase | inline |
| get_calc_rot_freq() const | core::pack::annealer::SimAnnealerBase | |
| get_hightemp() const | core::pack::annealer::SimAnnealerBase | inlineprotected |
| get_inneriterations() const | core::pack::annealer::SimAnnealerBase | |
| get_lowtemp() const | core::pack::annealer::SimAnnealerBase | inlineprotected |
| get_outeriterations() const | core::pack::annealer::SimAnnealerBase | |
| get_start_with_current() const | core::pack::annealer::SimAnnealerBase | |
| get_temperature() const | core::pack::annealer::SimAnnealerBase | |
| hightemp | core::pack::annealer::SimAnnealerBase | protectedstatic |
| ig_ | protocols::flexpack::annealer::FlexbbSimAnnealer | private |
| lowtemp | core::pack::annealer::SimAnnealerBase | protectedstatic |
| maxouteriterations | core::pack::annealer::SimAnnealerBase | protectedstatic |
| num_rots_to_pack() const | core::pack::annealer::SimAnnealerBase | inlineprotected |
| num_rots_to_pack(Size setting) | core::pack::annealer::SimAnnealerBase | protected |
| PackerEnergy typedef | protocols::flexpack::annealer::FlexbbSimAnnealer | |
| parent typedef | protocols::flexpack::annealer::FlexbbSimAnnealer | |
| pass_metropolis(core::PackerEnergy delta_energy) const | core::pack::annealer::SimAnnealerBase | |
| pass_metropolis(core::PackerEnergy previous_energy, core::PackerEnergy delta_energy) const | core::pack::annealer::SimAnnealerBase | |
| pass_metropolis_multiple_nodes_changing(PackerEnergy previous_fragmentE, PackerEnergy deltaE, core::Size num_changing_nodes) const | protocols::flexpack::annealer::FlexbbSimAnnealer | protected |
| pick_a_rotamer(core::Size outercycle, core::Size innercycle, core::Size cycle_number, utility::vector1< core::Size > &accessible_state_list) const | protocols::flexpack::annealer::FlexbbSimAnnealer | protected |
| quench() const | core::pack::annealer::SimAnnealerBase | |
| rot_freq() | core::pack::annealer::SimAnnealerBase | protected |
| rot_freq() const | core::pack::annealer::SimAnnealerBase | protected |
| RotamerSetsBaseCOP typedef | core::pack::annealer::SimAnnealerBase | |
| rotsets_ | protocols::flexpack::annealer::FlexbbSimAnnealer | private |
| run() override | protocols::flexpack::annealer::FlexbbSimAnnealer | virtual |
| scale_inneriterations(core::PackerEnergy const si) | core::pack::annealer::SimAnnealerBase | inline |
| scale_outeriterations(core::PackerEnergy const so) | core::pack::annealer::SimAnnealerBase | inline |
| set_annealer_observer(AnnealerObserverOP obs) | core::pack::annealer::SimAnnealerBase | inline |
| set_disallow_quench(bool const &setting) | core::pack::annealer::SimAnnealerBase | |
| set_hightemp(core::PackerEnergy) | core::pack::annealer::SimAnnealerBase | |
| set_lowtemp(core::PackerEnergy) | core::pack::annealer::SimAnnealerBase | |
| set_not_to_quench() | core::pack::annealer::SimAnnealerBase | |
| set_temperature(core::PackerEnergy new_temperature) | core::pack::annealer::SimAnnealerBase | |
| set_to_quench() | core::pack::annealer::SimAnnealerBase | |
| setup_iterations() | core::pack::annealer::SimAnnealerBase | |
| setup_iterations(const int &num_of_state_changes) | core::pack::annealer::SimAnnealerBase | |
| setup_temperature(const int &nn) | core::pack::annealer::SimAnnealerBase | |
| setup_temperature(const ObjexxFCL::FArray1D< core::PackerEnergy > &loopenergy, int nn) | core::pack::annealer::SimAnnealerBase | |
| SimAnnealerBase(int num_rots_to_pack, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, ObjexxFCL::FArray1_int ¤t_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq) | core::pack::annealer::SimAnnealerBase | |
| Size typedef | protocols::flexpack::annealer::FlexbbSimAnnealer | |
| start_with_current() const | core::pack::annealer::SimAnnealerBase | protected |
| ~FlexbbSimAnnealer() override | protocols::flexpack::annealer::FlexbbSimAnnealer | |
| ~SimAnnealerBase() override | core::pack::annealer::SimAnnealerBase | |
1.8.7