GlycopeptideDockingLowResRefinement.hh File Reference

Low resolution refinement of substrate. More...

#include <protocols/glycopeptide_docking/GlycopeptideDockingLowResRefinement.fwd.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/PyMOLMover.fwd.hh>
#include <protocols/glycopeptide_docking/GlycopeptideDockingFlags.fwd.hh>
#include <protocols/filters/Filter.fwd.hh>
#include <protocols/moves/MonteCarlo.fwd.hh>
#include <protocols/constraint_movers/ConstraintSetMover.fwd.hh>
#include <protocols/minimization_packing/MinMover.fwd.hh>
#include <protocols/simple_moves/BackboneMover.fwd.hh>
#include <protocols/rigid/RigidBodyMover.fwd.hh>
#include <protocols/minimization_packing/PackRotamersMover.fwd.hh>
#include <protocols/simple_task_operations/RestrictToInterface.fwd.hh>
#include <protocols/task_operations/RestrictResiduesToRepackingOperation.fwd.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/kinematics/FoldTree.fwd.hh>
#include <core/kinematics/MoveMap.fwd.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/conformation/Conformation.fwd.hh>
#include <core/conformation/Residue.fwd.hh>
#include <core/pack/task/TaskFactory.fwd.hh>
#include <core/pack/task/operation/TaskOperations.fwd.hh>
#include <core/pack/task/operation/OperateOnResidueSubset.fwd.hh>
#include <core/select/residue_selector/ResidueSpanSelector.fwd.hh>
#include <core/select/residue_selector/NotResidueSelector.fwd.hh>
#include <core/pose/PDBInfo.fwd.hh>
#include <core/types.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/ScoreType.hh>
#include <utility/pointer/owning_ptr.fwd.hh>
#include <utility/vector1.fwd.hh>
#include <utility/excn/Exceptions.fwd.hh>
#include <numeric/random/random.fwd.hh>
#include <basic/datacache/DataMap.fwd.hh>
#include <string>

Classes
class	protocols::glycopeptide_docking::GlycopeptideDockingLowResRefinement
	Low resolution refinement of substrate. More...

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::glycopeptide_docking

Functions
std::ostream &	protocols::glycopeptide_docking::operator<< (std::ostream &os, GlycopeptideDockingLowResRefinement const &mover)

Detailed Description

Low resolution refinement of substrate.

Low resolution refinement of glycosyltransferase peptide/glycopeptide substrate complex. This protocol allows enhanced sampling of the peptide/glycopeptide dofs in the low resolution mode with simulated annealing. Current protocol was only tested for monosaccharides. It does not treat the glycan-branch in a special manner. This behavior will change as the protocol is developed in future versions for higher glycans.

Author

Yashes Srinivasan (yashe.nosp@m.ss@g.nosp@m.mail..nosp@m.com)