| alpha_beta_pattern_ | protocols::ncbb::SecStructFinder | private |
| alpha_to_beta(std::string alpha) | protocols::ncbb::SecStructFinder | private |
| apply(core::pose::Pose &pose) override | protocols::ncbb::SecStructFinder | virtual |
| bin_size_ | protocols::ncbb::SecStructFinder | private |
| cart_ | protocols::ncbb::SecStructFinder | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::ncbb::SecStructFinder | virtual |
| constrain_ | protocols::ncbb::SecStructFinder | private |
| create() | protocols::moves::Mover | virtual |
| dihedral_max_ | protocols::ncbb::SecStructFinder | private |
| dihedral_min_ | protocols::ncbb::SecStructFinder | private |
| dihedral_pattern_ | protocols::ncbb::SecStructFinder | private |
| dissimilarity_ | protocols::ncbb::SecStructFinder | private |
| dump_threshold_ | protocols::ncbb::SecStructFinder | private |
| expand_pattern_to_fit(std::string pattern, core::Size length) | protocols::ncbb::SecStructFinder | private |
| fresh_instance() const override | protocols::ncbb::SecStructFinder | inlinevirtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::ncbb::SecStructFinder | inlinevirtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialize_pose(core::pose::Pose &pose) | protocols::ncbb::SecStructFinder | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| make_filename(core::Size number_dihedrals, utility::vector1< core::Real > dihedrals) | protocols::ncbb::SecStructFinder | private |
| max_length_ | protocols::ncbb::SecStructFinder | private |
| min_everything_ | protocols::ncbb::SecStructFinder | private |
| min_length_ | protocols::ncbb::SecStructFinder | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| parse_my_tag(utility::tag::TagCOP, basic::datacache::DataMap &) override | protocols::ncbb::SecStructFinder | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| residue_ | protocols::ncbb::SecStructFinder | private |
| score_fxn_ | protocols::ncbb::SecStructFinder | private |
| SecStructFinder() | protocols::ncbb::SecStructFinder | |
| SecStructFinder(std::string const &residue, core::Size min_length=5, core::Size max_length=5, core::Real bin_size=10, core::Real dissimilarity=10, core::Real dihedral_min=-180, core::Real dihedral_max=180, core::Real dump_threshold=-10000, std::string dihedral_pattern="A", std::string alpha_beta_pattern="A", bool min_everything=false, bool cart=false, bool constrain=false) | protocols::ncbb::SecStructFinder | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| show_current_dihedrals(core::Size number_dihedral_sets, utility::vector1< char > uniqs, utility::vector1< core::Real > dihedrals) | protocols::ncbb::SecStructFinder | private |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| too_similar(core::Size i, core::Size j, utility::vector1< core::Real > dihedrals) | protocols::ncbb::SecStructFinder | private |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| uniq_refers_to_beta(char uniq) | protocols::ncbb::SecStructFinder | private |
| ~SecStructFinder() override=default | protocols::ncbb::SecStructFinder | |
1.8.7