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protocols::flxbb::FlxbbDesign Member List

This is the complete list of members for protocols::flxbb::FlxbbDesign, including all inherited members.

add_design_task(DesignTaskOP const design_task)protocols::flxbb::FlxbbDesign
apply(Pose &pose) overrideprotocols::flxbb::FlxbbDesignvirtual
BluePrint typedefprotocols::flxbb::FlxbbDesign
blueprint_protocols::flxbb::FlxbbDesignprivate
BluePrintOP typedefprotocols::flxbb::FlxbbDesign
build_design_taskset(Pose const &pose)protocols::flxbb::FlxbbDesignprivate
clear_all_residues_protocols::flxbb::FlxbbDesignprivate
clear_design_taskset()protocols::flxbb::FlxbbDesign
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::flxbb::FlxbbDesignvirtual
constraints_NtoC_protocols::flxbb::FlxbbDesignprivate
constraints_sheet_protocols::flxbb::FlxbbDesignprivate
create()protocols::moves::Movervirtual
DataMap typedefprotocols::flxbb::FlxbbDesign
design_taskset_protocols::flxbb::FlxbbDesignprivate
DesignTaskOP typedefprotocols::flxbb::FlxbbDesign
DesignTaskSet typedefprotocols::flxbb::FlxbbDesign
filter_during_design_protocols::flxbb::FlxbbDesignprivate
FlxbbDesign()protocols::flxbb::FlxbbDesign
FlxbbDesign(ScoreFunctionOP const sfxnd, ScoreFunctionOP const sfxnr, core::Size const ncycle=3, String const &layer_mode="", bool const use_origseq_for_not_dsgned_layer=true, bool const no_relax=false)protocols::flxbb::FlxbbDesign
FlxbbDesign(FlxbbDesign const &rval)protocols::flxbb::FlxbbDesign
fresh_instance() const overrideprotocols::flxbb::FlxbbDesignvirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_movemap_from_blueprint(Pose const &pose, BluePrintOP const blueprint)protocols::flxbb::FlxbbDesignprivate
get_name() const overrideprotocols::flxbb::FlxbbDesignvirtual
get_native_pose() const protocols::moves::Mover
get_self_ptr() const protocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() const protocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() const protocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
initialize_filter(core::Size const filter_trial, String const &filter_type)protocols::flxbb::FlxbbDesign
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
layer_mode_protocols::flxbb::FlxbbDesignprivate
limit_aroma_chi2_protocols::flxbb::FlxbbDesignprivate
movemap_protocols::flxbb::FlxbbDesignprivate
movemap_factory_protocols::flxbb::FlxbbDesignprivate
movemap_from_blueprint(bool const value)protocols::flxbb::FlxbbDesign
movemap_from_blueprint_protocols::flxbb::FlxbbDesignprivate
MoveMapOP typedefprotocols::flxbb::FlxbbDesign
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
mover_name()protocols::flxbb::FlxbbDesignstatic
MoverOP typedefprotocols::flxbb::FlxbbDesign
name()protocols::moves::Moverinlinestatic
nflxbb_cycles_protocols::flxbb::FlxbbDesignprivate
no_design(bool const no_design)protocols::flxbb::FlxbbDesign
no_design_protocols::flxbb::FlxbbDesignprivate
no_relax(bool const no_relax)protocols::flxbb::FlxbbDesign
no_relax_protocols::flxbb::FlxbbDesignprivate
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) overrideprotocols::flxbb::FlxbbDesignvirtual
Pose typedefprotocols::flxbb::FlxbbDesign
PoseCOP typedefprotocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const protocols::moves::Movervirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::flxbb::FlxbbDesignstatic
read_options()protocols::flxbb::FlxbbDesign
Real typedefprotocols::flxbb::FlxbbDesign
register_options()protocols::flxbb::FlxbbDesignstatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
relax_constraint_to_design_protocols::flxbb::FlxbbDesignprivate
reset_status()protocols::moves::Mover
resfile_protocols::flxbb::FlxbbDesignprivate
ScoreFunction typedefprotocols::flxbb::FlxbbDesign
ScoreFunctionOP typedefprotocols::flxbb::FlxbbDesign
scorefxn_design_protocols::flxbb::FlxbbDesignprivate
scorefxn_relax_protocols::flxbb::FlxbbDesignprivate
set_blueprint(BluePrintOP const blueprint)protocols::flxbb::FlxbbDesign
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_design_taskset(DesignTaskSet const &design_taskset)protocols::flxbb::FlxbbDesign
set_filter_during_design(FilterStructsOP const filter_during_design)protocols::flxbb::FlxbbDesign
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_layer_mode(String const &layer_mode)protocols::flxbb::FlxbbDesign
set_movemap(MoveMapOP const movemap)protocols::flxbb::FlxbbDesign
set_movemap_factory(core::select::movemap::MoveMapFactoryCOP movemap_factory)protocols::flxbb::FlxbbDesign
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_ncycles(core::Size const ncycles)protocols::flxbb::FlxbbDesign
set_scorefxn_design(ScoreFunctionOP const scorefxn)protocols::flxbb::FlxbbDesign
set_scorefxn_relax(ScoreFunctionOP const scorefxn)protocols::flxbb::FlxbbDesign
set_type(std::string const &setting)protocols::moves::Moverinline
set_weight_constraints_NtoC(Real const value)protocols::flxbb::FlxbbDesign
set_weight_constraints_sheet(Real const value)protocols::flxbb::FlxbbDesign
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
Size typedefprotocols::flxbb::FlxbbDesign
String typedefprotocols::flxbb::FlxbbDesign
Strings typedefprotocols::moves::Mover
Super typedefprotocols::flxbb::FlxbbDesign
TagCOP typedefprotocols::flxbb::FlxbbDesign
task_operations_protocols::flxbb::FlxbbDesignprivate
TaskOperation typedefprotocols::flxbb::FlxbbDesign
TaskOperationOP typedefprotocols::flxbb::FlxbbDesign
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type(const std::string &type_in)protocols::moves::Moverinline
type() const protocols::moves::Moverinline
use_fast_relax_protocols::flxbb::FlxbbDesignprivate
use_origseq_for_not_dsgned_layer(bool const use)protocols::flxbb::FlxbbDesign
use_origseq_for_not_dsgned_layer_protocols::flxbb::FlxbbDesignprivate
~FlxbbDesign() overrideprotocols::flxbb::FlxbbDesign
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