core::scoring::sc::ShapeSimilarityCalculator Member List

This is the complete list of members for core::scoring::sc::ShapeSimilarityCalculator, including all inherited members.

AddAtom(int molecule, Atom &atom)	core::scoring::sc::MolecularSurfaceCalculator
AddDot(int const molecule, int const type, Vec3 const &coor, ScValue const area, Vec3 const &pcen, Atom const &atom)	core::scoring::sc::MolecularSurfaceCalculator	protected
AddResidue(int molecule, core::conformation::Residue const &residue, bool apolar_only=false)	core::scoring::sc::MolecularSurfaceCalculator
AssignAtomRadius(Atom &atom)	core::scoring::sc::MolecularSurfaceCalculator	protected
AssignAttentionNumbers(std::vector< Atom > &atom) override	core::scoring::sc::ShapeSimilarityCalculator	protectedvirtual
atoms	core::scoring::sc::MolecularSurfaceCalculator
band	core::scoring::sc::MolecularSurfaceCalculator
binwidth_dist	core::scoring::sc::MolecularSurfaceCalculator
binwidth_norm	core::scoring::sc::MolecularSurfaceCalculator
Calc() override	core::scoring::sc::ShapeSimilarityCalculator	virtual
core::scoring::sc::MolecularSurfaceCalculator::Calc(core::pose::Pose const &pose, core::Size jump_id=0)	core::scoring::sc::MolecularSurfaceCalculator	virtual
CalcNeighborDistance(int const molecule, std::vector< const DOT * > const &my_dots, std::vector< const DOT * > const &their_dots)	core::scoring::sc::ShapeSimilarityCalculator	private
CalcNeighborDistanceFindClosestNeighbor(DOT const &dot1, std::vector< const DOT * > const &their_dots)	core::scoring::sc::ShapeSimilarityCalculator	private
CalcSs(core::pose::Pose const &pose, core::pose::Pose const &native, core::select::residue_selector::ResidueSelectorCOP selector_pose, core::select::residue_selector::ResidueSelectorCOP selector_native)	core::scoring::sc::ShapeSimilarityCalculator
density	core::scoring::sc::MolecularSurfaceCalculator
dots	core::scoring::sc::MolecularSurfaceCalculator
GenerateMolecularSurfaces()	core::scoring::sc::MolecularSurfaceCalculator	protected
GetAtoms()	core::scoring::sc::MolecularSurfaceCalculator	inline
GetDots(int const moleculeid)	core::scoring::sc::MolecularSurfaceCalculator	inline
GetResults()	core::scoring::sc::MolecularSurfaceCalculator	inline
GetTrimmedDots(int const moleculeid)	core::scoring::sc::MolecularSurfaceCalculator	inline
Init()	core::scoring::sc::MolecularSurfaceCalculator	virtual
median	core::scoring::sc::ShapeSimilarityCalculator
MolecularSurfaceCalculator()	core::scoring::sc::MolecularSurfaceCalculator
near_squared_size	core::scoring::sc::MolecularSurfaceCalculator
prevburied	core::scoring::sc::MolecularSurfaceCalculator
prevp	core::scoring::sc::MolecularSurfaceCalculator
probes	core::scoring::sc::MolecularSurfaceCalculator
radii_	core::scoring::sc::MolecularSurfaceCalculator	protectedstatic
radmax	core::scoring::sc::MolecularSurfaceCalculator
ReadScRadii()	core::scoring::sc::MolecularSurfaceCalculator	protected
Reset()	core::scoring::sc::MolecularSurfaceCalculator
results	core::scoring::sc::MolecularSurfaceCalculator
rp	core::scoring::sc::MolecularSurfaceCalculator
run_	core::scoring::sc::MolecularSurfaceCalculator	protected
ScValue typedef	core::scoring::sc::MolecularSurfaceCalculator
sep	core::scoring::sc::MolecularSurfaceCalculator
settings	core::scoring::sc::MolecularSurfaceCalculator
ShapeSimilarityCalculator()	core::scoring::sc::ShapeSimilarityCalculator
trimmed_dots	core::scoring::sc::MolecularSurfaceCalculator
TrimPeripheralBand(std::vector< DOT > const &sdots, std::vector< const DOT * > &trimmed_dots)	core::scoring::sc::ShapeSimilarityCalculator	private
TrimPeripheralBandCheckDot(DOT const &dot, std::vector< DOT > const &sdots)	core::scoring::sc::ShapeSimilarityCalculator	private
use_rosetta_radii	core::scoring::sc::MolecularSurfaceCalculator
Vec3 typedef	core::scoring::sc::MolecularSurfaceCalculator
weight	core::scoring::sc::MolecularSurfaceCalculator
WildcardMatch(char const *query, char const *pattern, int const l)	core::scoring::sc::MolecularSurfaceCalculator	protected
~MolecularSurfaceCalculator() override	core::scoring::sc::MolecularSurfaceCalculator
~ShapeSimilarityCalculator() override	core::scoring::sc::ShapeSimilarityCalculator