#include <InterModelMotifScorer.hh>

Inheritance diagram for protocols::sewing::scoring::InterModelMotifScorer:

Public Member Functions
	InterModelMotifScorer ()
	default construct More...

	~InterModelMotifScorer () override=default

	InterModelMotifScorer (InterModelMotifScorer const &)

core::Real	score (data_storage::SmartAssemblyCOP assembly) override

core::Real	full_motif_score (data_storage::SmartAssemblyCOP assembly)

std::string	get_name () const override

core::Real	get_weight () const override

void	set_weight (core::Real) override

void	set_options_from_tag (utility::tag::TagCOP scorer_tag, basic::datacache::DataMap &datamap) override

Public Member Functions inherited from protocols::sewing::scoring::MotifScorer
	MotifScorer ()
	default construct More...

	~MotifScorer () override=default

	MotifScorer (MotifScorer const &)

core::Real	score (data_storage::SmartAssemblyCOP assembly) override

core::Real	norm_motif_score (data_storage::SmartAssemblyCOP assembly)

core::Real	full_motif_score (data_storage::SmartAssemblyCOP assembly)

numeric::xyzTransform< core::Real >	get_stub (data_storage::SmartSewingResidueCOP residue) const

core::Real	get_score (numeric::xyzTransform< core::Real > stub1, char ss1, char aa1, numeric::xyzTransform< core::Real > stub2, char ss2, char aa2) const

std::string	get_name () const override

core::Real	get_weight () const override

void	set_weight (core::Real) override

void	set_options_from_tag (utility::tag::TagCOP scorer_tag, basic::datacache::DataMap &datamap) override

core::Real	get_last_score () const override

void	set_last_score (core::Real score) override

core::Real	get_old_last_score () const override

void	set_old_last_score (core::Real score) override

Public Member Functions inherited from protocols::sewing::scoring::AssemblyScorer
virtual	~AssemblyScorer ()=default
	Destructor. More...

	AssemblyScorer ()=default
	Prevent direct instantiation: No other constructors allowed. More...

	AssemblyScorer (AssemblyScorer const &)=default

Static Public Member Functions
static std::string	type_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &)

Static Public Member Functions inherited from protocols::sewing::scoring::MotifScorer
static std::string	type_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &)

Private Attributes
core::Real	weight_ =10.0

Additional Inherited Members
Protected Attributes inherited from protocols::sewing::scoring::MotifScorer
core::scoring::motif::MotifHashManager &	mman_

core::chemical::ResidueTypeSetCOP	res_type_set_

core::Real	last_score_ =1000

core::Real	old_last_score_ =1000

Constructor & Destructor Documentation

protocols::sewing::scoring::InterModelMotifScorer::InterModelMotifScorer ( )

default construct

protocols::sewing::scoring::InterModelMotifScorer::~InterModelMotifScorer ( )

overridedefault

protocols::sewing::scoring::InterModelMotifScorer::InterModelMotifScorer ( InterModelMotifScorer const & src )

Member Function Documentation

core::Real protocols::sewing::scoring::InterModelMotifScorer::full_motif_score ( data_storage::SmartAssemblyCOP assembly )

use Will's Motif score to calculate the motif score for interactions between a given segment and segments from other models. Divide by total number of segments

References protocols::sewing::data_storage::SmartSegment::get_n_most_segment(), protocols::sewing::scoring::MotifScorer::get_score(), protocols::sewing::scoring::MotifScorer::get_stub(), protocols::sewing::scoring::MotifScorer::res_type_set_, score(), and protocols::sewing::scoring::TR().

Referenced by score().

std::string protocols::sewing::scoring::InterModelMotifScorer::get_name ( ) const

overridevirtual

Implements protocols::sewing::scoring::AssemblyScorer.

core::Real protocols::sewing::scoring::InterModelMotifScorer::get_weight ( ) const

overridevirtual

Implements protocols::sewing::scoring::AssemblyScorer.

References weight_.

void protocols::sewing::scoring::InterModelMotifScorer::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References protocols::sewing::scoring::AssemblyScorerFactory::assembly_scorer_ct_namer(), and type_name().