| add_linker() const | protocols::cyclic_peptide::CrosslinkerMover | inline |
| add_linker_ | protocols::cyclic_peptide::CrosslinkerMover | private |
| add_linker_asymmetric(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection, protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelperCOP helper) const | protocols::cyclic_peptide::CrosslinkerMover | private |
| add_linker_constraints_asymmetric(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection, protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelperCOP helper) const | protocols::cyclic_peptide::CrosslinkerMover | private |
| add_linker_constraints_symmetric(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection, protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelperCOP helper, bool const linker_was_added) const | protocols::cyclic_peptide::CrosslinkerMover | private |
| add_linker_symmetric(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection, protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelperCOP helper) const | protocols::cyclic_peptide::CrosslinkerMover | private |
| apply(core::pose::Pose &pose) override | protocols::cyclic_peptide::CrosslinkerMover | virtual |
| asymmetric_apply(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection, protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelperCOP helper) | protocols::cyclic_peptide::CrosslinkerMover | private |
| class_name() | protocols::cyclic_peptide::CrosslinkerMover | static |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::cyclic_peptide::CrosslinkerMover | virtual |
| constrain_linker() const | protocols::cyclic_peptide::CrosslinkerMover | inline |
| constrain_linker_ | protocols::cyclic_peptide::CrosslinkerMover | private |
| constraints_energy_filter_multiplier() const | protocols::cyclic_peptide::CrosslinkerMover | inlineprivate |
| constraints_energy_filter_multiplier_ | protocols::cyclic_peptide::CrosslinkerMover | private |
| create() | protocols::moves::Mover | virtual |
| CrosslinkerMover() | protocols::cyclic_peptide::CrosslinkerMover | |
| CrosslinkerMover(CrosslinkerMover const &src) | protocols::cyclic_peptide::CrosslinkerMover | |
| do_final_fastrelax() const | protocols::cyclic_peptide::CrosslinkerMover | inline |
| do_final_fastrelax_ | protocols::cyclic_peptide::CrosslinkerMover | private |
| filter_by_constraints_energy() const | protocols::cyclic_peptide::CrosslinkerMover | inlineprivate |
| filter_by_constraints_energy_ | protocols::cyclic_peptide::CrosslinkerMover | private |
| filter_by_constraints_energy_asymmetric(core::pose::Pose const &pose, core::select::residue_selector::ResidueSubset const &selection, protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelperCOP helper) const | protocols::cyclic_peptide::CrosslinkerMover | private |
| filter_by_constraints_energy_symmetric(core::pose::Pose const &pose, core::select::residue_selector::ResidueSubset const &selection, protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelperCOP helper, bool const linker_was_added) const | protocols::cyclic_peptide::CrosslinkerMover | private |
| filter_by_sidechain_distance() const | protocols::cyclic_peptide::CrosslinkerMover | inlineprivate |
| filter_by_sidechain_distance_ | protocols::cyclic_peptide::CrosslinkerMover | private |
| filter_by_sidechain_distance_asymmetric(core::pose::Pose const &pose, core::select::residue_selector::ResidueSubset const &selection, protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelperCOP helper) const | protocols::cyclic_peptide::CrosslinkerMover | private |
| filter_by_sidechain_distance_symmetric(core::pose::Pose const &pose, core::select::residue_selector::ResidueSubset const &selection, protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelperCOP helper) const | protocols::cyclic_peptide::CrosslinkerMover | private |
| filter_by_total_score(core::pose::Pose const &pose) const | protocols::cyclic_peptide::CrosslinkerMover | private |
| filter_by_total_score() const | protocols::cyclic_peptide::CrosslinkerMover | inlineprivate |
| filter_by_total_score_ | protocols::cyclic_peptide::CrosslinkerMover | private |
| filter_by_total_score_cutoff_energy() const | protocols::cyclic_peptide::CrosslinkerMover | inlineprivate |
| filter_by_total_score_cutoff_energy_ | protocols::cyclic_peptide::CrosslinkerMover | private |
| final_frlx_rounds() const | protocols::cyclic_peptide::CrosslinkerMover | inline |
| final_frlx_rounds_ | protocols::cyclic_peptide::CrosslinkerMover | private |
| fresh_instance() const override | protocols::cyclic_peptide::CrosslinkerMover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_crosslinker_enum(std::string const &name) | protocols::cyclic_peptide::CrosslinkerMover | static |
| get_crosslinker_name(CrossLinker const crosslinker) | protocols::cyclic_peptide::CrosslinkerMover | static |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_jump_index_for_crosslinker(core::pose::Pose const &pose, core::Size const linker_index) const | protocols::cyclic_peptide::CrosslinkerMover | private |
| get_jump_indices_for_symmetric_crosslinker(core::pose::Pose const &pose, utility::vector1< core::Size > const &linker_indices_in, utility::vector1< core::Size > &jump_indices_out) const | protocols::cyclic_peptide::CrosslinkerMover | private |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::cyclic_peptide::CrosslinkerMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| linker_ | protocols::cyclic_peptide::CrosslinkerMover | private |
| linker_name() const | protocols::cyclic_peptide::CrosslinkerMover | |
| metal_type() const | protocols::cyclic_peptide::CrosslinkerMover | inline |
| metal_type_ | protocols::cyclic_peptide::CrosslinkerMover | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::cyclic_peptide::CrosslinkerMover | static |
| name() | protocols::moves::Mover | inlinestatic |
| pack_and_minimize_linker_and_sidechains() const | protocols::cyclic_peptide::CrosslinkerMover | inline |
| pack_and_minimize_linker_and_sidechains(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection, protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelperCOP helper, bool const whole_structure, bool const symmetric) const | protocols::cyclic_peptide::CrosslinkerMover | private |
| pack_and_minimize_linker_and_sidechains_ | protocols::cyclic_peptide::CrosslinkerMover | private |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override | protocols::cyclic_peptide::CrosslinkerMover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::cyclic_peptide::CrosslinkerMover | static |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| residue_selector() const | protocols::cyclic_peptide::CrosslinkerMover | inline |
| residue_selector_ | protocols::cyclic_peptide::CrosslinkerMover | private |
| scorefxn() const | protocols::cyclic_peptide::CrosslinkerMover | |
| set_behaviour(bool const add_linker, bool const constrain_linker, bool const pack_and_minimize_linker_and_sidechains, bool const do_final_fastrelax) | protocols::cyclic_peptide::CrosslinkerMover | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_filter_behaviour(bool const filter_by_sidechain_distance, bool const filter_by_constraints_energy, bool const filter_by_total_score, core::Real const &filter_by_total_score_cutoff_energy, core::Real const &sidechain_distance_filter_multiplier, core::Real const &constraints_energy_filter_multiplier) | protocols::cyclic_peptide::CrosslinkerMover | |
| set_final_frlx_rounds(core::Size const rounds_in) | protocols::cyclic_peptide::CrosslinkerMover | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_linker_name(std::string const &name_in) | protocols::cyclic_peptide::CrosslinkerMover | |
| set_metal_type(std::string const &metal_in) | protocols::cyclic_peptide::CrosslinkerMover | |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_residue_selector(core::select::residue_selector::ResidueSelectorCOP selector_in) | protocols::cyclic_peptide::CrosslinkerMover | |
| set_scorefxn(core::scoring::ScoreFunctionCOP sfxn_in) | protocols::cyclic_peptide::CrosslinkerMover | |
| set_sidechain_frlx_rounds(core::Size const rounds_in) | protocols::cyclic_peptide::CrosslinkerMover | |
| set_symm_count(signed int const count_in) | protocols::cyclic_peptide::CrosslinkerMover | |
| set_symm_type(char const type_in) | protocols::cyclic_peptide::CrosslinkerMover | |
| set_symmetry(std::string const &symmetry_in) | protocols::cyclic_peptide::CrosslinkerMover | |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| sfxn_ | protocols::cyclic_peptide::CrosslinkerMover | private |
| show(std::ostream &output=std::cout) const override | protocols::cyclic_peptide::CrosslinkerMover | virtual |
| sidechain_distance_filter_multiplier() const | protocols::cyclic_peptide::CrosslinkerMover | inlineprivate |
| sidechain_distance_filter_multiplier_ | protocols::cyclic_peptide::CrosslinkerMover | private |
| sidechain_frlx_rounds() const | protocols::cyclic_peptide::CrosslinkerMover | inline |
| sidechain_frlx_rounds_ | protocols::cyclic_peptide::CrosslinkerMover | private |
| Strings typedef | protocols::moves::Mover | |
| symm_count() const | protocols::cyclic_peptide::CrosslinkerMover | inline |
| symm_count_ | protocols::cyclic_peptide::CrosslinkerMover | private |
| symm_type() const | protocols::cyclic_peptide::CrosslinkerMover | inline |
| symm_type_ | protocols::cyclic_peptide::CrosslinkerMover | private |
| symmetric_apply(core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &selection, protocols::cyclic_peptide::crosslinker::CrosslinkerMoverHelperCOP helper) | protocols::cyclic_peptide::CrosslinkerMover | private |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| ~CrosslinkerMover() override | protocols::cyclic_peptide::CrosslinkerMover | |
1.8.7