#include <TotalScoreFeatures.hh>

Inheritance diagram for protocols::features::TotalScoreFeatures:

Public Member Functions
	TotalScoreFeatures ()
	Default constructor. More...

	TotalScoreFeatures (core::scoring::ScoreFunctionOP scorefxn)
	Constructor with score function argument. More...

	~TotalScoreFeatures () override
	Default destructor. More...

core::scoring::ScoreFunctionCOP	scorefxn () const

void	scorefxn (core::scoring::ScoreFunctionOP scorefxn)
	Set the score function being reported by this object. More...

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data) override

void	write_schema_to_db (utility::sql_database::sessionOP db_session) const override
	Define the schema and write it to the database. This is most easily achieved using the schema_generator. Once everything has converted to the schema generator this should be made a pure virtual. More...

core::Size	report_features (core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, StructureID struct_id, utility::sql_database::sessionOP db_session) override
	collect all the feature data for the pose. More...

std::string	type_name () const override

Public Member Functions inherited from protocols::features::FeaturesReporter
	FeaturesReporter ()

	~FeaturesReporter () override
	Automatically generated virtual destructor for class deriving directly from VirtualBase. More...

virtual std::string	schema () const
	return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...

virtual utility::vector1 < std::string >	features_reporter_dependencies () const
	return the set of features reporters that are required to also already be extracted by the time this one is used. More...

core::Size	report_features (core::pose::Pose const &, StructureID, utility::sql_database::sessionOP)
	collect all the feature data for the pose. More...

virtual void	load_into_pose (utility::sql_database::sessionOP, StructureID, core::pose::Pose &)

virtual void	delete_record (StructureID, utility::sql_database::sessionOP)

void	set_relevant_residues_mode (RelevantResiduesMode::T setting)

RelevantResiduesMode::T	get_relevant_residues_mode () const

bool	check_relevant_residues (utility::vector1< bool > const &relevant_residues, core::Size res1) const

bool	check_relevant_residues (utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const

bool	check_relevant_residues_range (utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const

bool	check_relevant_residues (utility::vector1< bool > const &relevant_residues, utility::vector1< core::Size > const &residues) const

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
core::scoring::ScoreFunctionOP	scorefxn_

Additional Inherited Members
Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string	find_tag (core::pose::Pose const &pose) const

void	delete_records_from_table (std::string const &table_name, StructureID struct_id, utility::sql_database::sessionOP db_session)
	a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...

Protected Attributes inherited from protocols::features::FeaturesReporter
RelevantResiduesMode::T	relevant_residues_mode_

Constructor & Destructor Documentation

protocols::features::TotalScoreFeatures::TotalScoreFeatures ( )

Default constructor.

protocols::features::TotalScoreFeatures::TotalScoreFeatures ( core::scoring::ScoreFunctionOP scorefxn )

Constructor with score function argument.

protocols::features::TotalScoreFeatures::~TotalScoreFeatures ( )

overridedefault

Default destructor.

Member Function Documentation

std::string protocols::features::TotalScoreFeatures::class_name ( )

static

Referenced by provide_xml_schema(), protocols::features::TotalScoreFeaturesCreator::type_name(), and type_name().

void protocols::features::TotalScoreFeatures::parse_my_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	data
	)

overridevirtual

Reimplemented from protocols::features::FeaturesReporter.

References scorefxn_, and type_name().

void protocols::features::TotalScoreFeatures::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References class_name(), and protocols::features::xsd_type_definition_w_attributes().

Referenced by protocols::features::TotalScoreFeaturesCreator::provide_xml_schema().

Size protocols::features::TotalScoreFeatures::report_features	(	core::pose::Pose const &	pose,
		utility::vector1< bool > const &	relevant_residues,
		StructureID	struct_id,
		utility::sql_database::sessionOP	db_session
	)

overridevirtual

collect all the feature data for the pose.

Implements protocols::features::FeaturesReporter.

References scorefxn_, and core::scoring::total_score.

ScoreFunctionCOP protocols::features::TotalScoreFeatures::scorefxn ( ) const

Get the score function being reported by this object.

References scorefxn_.

Referenced by scorefxn().

void protocols::features::TotalScoreFeatures::scorefxn ( core::scoring::ScoreFunctionOP scorefxn )

Set the score function being reported by this object.

References scorefxn(), and scorefxn_.

std::string protocols::features::TotalScoreFeatures::type_name ( ) const

overridevirtual

Reimplemented from protocols::features::FeaturesReporter.

References class_name().

Referenced by parse_my_tag().

void protocols::features::TotalScoreFeatures::write_schema_to_db ( utility::sql_database::sessionOP db_session ) const

overridevirtual

Define the schema and write it to the database. This is most easily achieved using the schema_generator. Once everything has converted to the schema generator this should be made a pure virtual.

Implements protocols::features::FeaturesReporter.

References protocols::hybridization::score.

Member Data Documentation

core::scoring::ScoreFunctionOP protocols::features::TotalScoreFeatures::scorefxn_

private

Referenced by parse_my_tag(), report_features(), and scorefxn().

The documentation for this class was generated from the following files:

src/protocols/features/TotalScoreFeatures.hh
src/protocols/features/TotalScoreFeatures.cc

Public Member Functions

Static Public Member Functions

Private Attributes

Additional Inherited Members

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation