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Rosetta
2021.16
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Rosetta
2021.16
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This is the complete list of members for core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary, including all inherited members.
| AA typedef | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | |
| aa() const | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | inline |
| aa_ | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | private |
| all_rots_bb_ | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | private |
| assign_random_rotamer_with_bias(conformation::Residue const &rsd, pose::Pose const &pose, RotamerLibraryScratchSpace &scratch, numeric::random::RandomGenerator &RG, ChiVector &new_chi_angles, bool perturb_from_rotamer_center) const override | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | virtual |
| atoms_w_dof_derivatives(conformation::Residue const &rsd, pose::Pose const &pose) const override | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | virtual |
| best_rotamer_energy(conformation::Residue const &rsd, pose::Pose const &pose, bool curr_rotamer_only, RotamerLibraryScratchSpace &scratch) const override | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | virtual |
| bin_angle(Real const angle_start, Real const angle_step, Real const ASSERT_ONLY(angle_range), Size const nbins, Real const ang, Size &bin_lower, Size &bin_upper, Real &angle_alpha) const | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | inlineprivate |
| bump_check(core::conformation::ResidueCOP rotamer, core::Size resid, scoring::ScoreFunction const &sf, pose::Pose const &pose, task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph) const | core::pack::rotamers::SingleResidueRotamerLibrary | virtual |
| bump_filter(RotamerVector &rotamers, core::Size resid, scoring::ScoreFunction const &sf, pose::Pose const &pose, task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph) const | core::pack::rotamers::SingleResidueRotamerLibrary | virtual |
| compute_proton_chi_samplings(chemical::ResidueType const &concrete_residue, pack::task::ResidueLevelTask const &rlt, bool buried) const | core::pack::rotamers::SingleResidueRotamerLibrary | virtual |
| current_rotamer(RotamerVector &rotamers, core::Size resid, task::PackerTask const &task, chemical::ResidueTypeCOP concrete_residue, conformation::Residue const &existing_residue) const | core::pack::rotamers::SingleResidueRotamerLibrary | virtual |
| dummy_sample_ | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | private |
| emergency_rotamer(RotamerVector &rotamers, core::Size resid, pose::Pose const &pose, task::PackerTask const &task, chemical::ResidueTypeCOP concrete_residue, conformation::Residue const &existing_residue) const | core::pack::rotamers::SingleResidueRotamerLibrary | virtual |
| entropy_ | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | private |
| eval_rotameric_energy_bb_dof_deriv(conformation::Residue const &rsd, RotamerLibraryScratchSpace &scratch) const | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | |
| eval_rotameric_energy_deriv(conformation::Residue const &rsd, RotamerLibraryScratchSpace &scratch, bool eval_deriv) const | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | |
| expand_proton_chis(utility::vector1< utility::vector1< core::Real > > const &sampling, chemical::ResidueType const &concrete_residue, core::Size max_rotamers=5000) const | core::pack::rotamers::SingleResidueRotamerLibrary | virtual |
| fill_rotamer_vector(pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, pack::task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph, chemical::ResidueTypeCOP concrete_residue, conformation::Residue const &existing_residue, utility::vector1< utility::vector1< Real > > const &extra_chi_steps, bool buried, rotamers::RotamerVector &rotamers) const override | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | virtual |
| get_closest_rotamer(conformation::Residue const &rsd, Size &nrot, Real &dis) const | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | |
| get_phi_from_rsd(conformation::Residue const &rsd) const | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | private |
| get_phipsi_bins(Real phi, Real psi, Size &phibin, Size &psibin, Size &phibin_next, Size &psibin_next, Real &phi_alpha, Real &psi_alpha) const | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | private |
| get_phipsi_bins(Real phi, Real psi, Size &phibin, Size &psibin) const | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | private |
| get_psi_from_rsd(conformation::Residue const &rsd) const | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | private |
| get_rotamer_samples(conformation::Residue const &rsd) const | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | |
| MAX_ROT_ENERGY | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | protectedstatic |
| max_rot_num | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | private |
| MIN_ROT_PROB | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | protectedstatic |
| N_PHIPSI_BINS | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | protectedstatic |
| NEUTRAL_PHI | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | protectedstatic |
| NEUTRAL_PSI | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | protectedstatic |
| operator==(SingleResidueRotamerLibrary const &) const | core::pack::rotamers::SingleResidueRotamerLibrary | virtual |
| PHIPSI_BINRANGE | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | protectedstatic |
| read_from_file(utility::io::izstream &infile, bool first_line_three_letter_code_already_read) | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | |
| ref_energy_ | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | private |
| rotamer_energy(conformation::Residue const &rsd, pose::Pose const &pose, RotamerLibraryScratchSpace &scratch) const override | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | virtual |
| rotamer_energy_deriv(conformation::Residue const &rsd, pose::Pose const &pose, RotamerLibraryScratchSpace &scratch) const override | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | virtual |
| RSD_PHI_INDEX | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | protectedstatic |
| RSD_PSI_INDEX | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | protectedstatic |
| setup_entropy_correction() | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | private |
| SingleResidueCenrotLibrary(AA const aa) | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | |
| SingleResidueRotamerLibrary() | core::pack::rotamers::SingleResidueRotamerLibrary | inline |
| verify_phipsi_bins(Real phi, Real psi, Size const phibin, Size const psibin, Size const phibin_next, Size const psibin_next) const | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | private |
| virtual_sidechain(RotamerVector const &rotamers, core::Size resid, pose::Pose const &pose, task::PackerTask const &task, chemical::ResidueTypeCOP concrete_residue, conformation::Residue const &existing_residue) const | core::pack::rotamers::SingleResidueRotamerLibrary | |
| write_to_file(utility::io::ozstream &out) const override | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | virtual |
| ~SingleResidueCenrotLibrary() override | core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary | |
| ~SingleResidueRotamerLibrary() override | core::pack::rotamers::SingleResidueRotamerLibrary |
1.8.7