core::scoring::motif::MotifHits Class Reference

#include <motif_hash_stuff.hh>

Inheritance diagram for core::scoring::motif::MotifHits:

Public Types
typedef boost::unordered_multimap < uint32_t, uint32_t >	ResMap

Public Member Functions
void	compute_metrics () const
void	filter_redundant ()
void	sort_by_rms_and_energy ()
void	dump_motifs_pdb (std::ostream &out, int &count, Size &atomno, numeric::Xforms const &xforms=XsI) const
void	dump_motifs_pdb (std::string const &fname, Size &atomno, numeric::Xforms const &xforms=XsI) const
void	dump_motifs_pdb (std::string const &fname, core::pose::Pose const &pose, Size &atomno, numeric::Xforms const &xforms=XsI) const
void	dump_motifs_pdb (std::ostream &out, int &count, numeric::Xforms const &xforms=XsI) const
void	dump_motifs_pdb (std::string const &fname, numeric::Xforms const &xforms=XsI) const
void	dump_motifs_pdb (std::string const &fname, core::pose::Pose const &pose, numeric::Xforms const &xforms=XsI) const
void	dump_motifs_pdb (std::ostream &out, numeric::Xforms const &xforms=XsI) const
int	stat_motifs (MotifHitStats &stat) const
std::string	get_resfile (bool restrict=false) const
std::string	get_resfile (bool restrict, std::set< core::Size > &resi_in_resfile) const
void	dump_resfile (std::string fn) const
void	push_back (MotifHit const &h)
void	push_back_raw (MotifHit const &h)
Size	num_hits1 (Size ir) const
Size	num_hits2 (Size ir) const
Size	num_hits (Size ir) const
ResPairMotifPtrs	hits1 (Size ir) const
ResPairMotifPtrs	hits2 (Size ir) const

Public Attributes
int	rescover
int	paircover
Real	total_score
ResMap	resmap1_
ResMap	resmap2_

Friends
std::ostream &	operator<< (std::ostream &out, MotifHits const &h)

Member Typedef Documentation

typedef boost::unordered_multimap<uint32_t,uint32_t> core::scoring::motif::MotifHits::ResMap

Member Function Documentation

void core::scoring::motif::MotifHits::compute_metrics

(

)

const

References paircover, rescover, and total_score.

Referenced by core::scoring::motif::operator<<().

void core::scoring::motif::MotifHits::dump_motifs_pdb	(	std::ostream &	out,
		int &	count,
		Size &	atomno,
		numeric::Xforms const &	xforms = XsI
	)		const

Referenced by protocols::matdes::SchemePlaceMotifsMover::apply(), protocols::legacy_sewing::scoring::LegacyMotifScorer::dump_motif(), and dump_motifs_pdb().

void core::scoring::motif::MotifHits::dump_motifs_pdb	(	std::string const &	fname,
		Size &	atomno,
		numeric::Xforms const &	xforms = XsI
	)		const

void core::scoring::motif::MotifHits::dump_motifs_pdb	(	std::string const &	fname,
		core::pose::Pose const &	pose,
		Size &	atomno,
		numeric::Xforms const &	xforms = XsI
	)		const

References dump_motifs_pdb(), and core::pose::Pose::dump_pdb().

void core::scoring::motif::MotifHits::dump_motifs_pdb ( std::ostream &  out, int &  count, numeric::Xforms const &  xforms = XsI  ) const

inline

References dump_motifs_pdb().

Referenced by dump_motifs_pdb().

void core::scoring::motif::MotifHits::dump_motifs_pdb ( std::string const &  fname, numeric::Xforms const &  xforms = XsI  ) const

inline

References dump_motifs_pdb().

Referenced by dump_motifs_pdb().

void core::scoring::motif::MotifHits::dump_motifs_pdb ( std::string const &  fname, core::pose::Pose const &  pose, numeric::Xforms const &  xforms = XsI  ) const

inline

References dump_motifs_pdb().

Referenced by dump_motifs_pdb().

void core::scoring::motif::MotifHits::dump_motifs_pdb ( std::ostream &  out, numeric::Xforms const &  xforms = XsI  ) const

inline

References dump_motifs_pdb().

Referenced by dump_motifs_pdb().

void core::scoring::motif::MotifHits::dump_resfile

(

std::string

fn

)

const

References get_resfile(), and core::conformation::membrane::out.

void core::scoring::motif::MotifHits::filter_redundant

(

)

References core::sequence::end.

string core::scoring::motif::MotifHits::get_resfile

(

bool

restrict = false

)

const

Referenced by dump_resfile().

std::string core::scoring::motif::MotifHits::get_resfile	(	bool	restrict,
		std::set< core::Size > &	resi_in_resfile
	)		const

ResPairMotifPtrs core::scoring::motif::MotifHits::hits1

(

Size

ir

)

const

References resmap1_.

ResPairMotifPtrs core::scoring::motif::MotifHits::hits2

(

Size

ir

)

const

References resmap2_.

Size core::scoring::motif::MotifHits::num_hits

(

Size

ir

)

const

References resmap1_, and resmap2_.

Size core::scoring::motif::MotifHits::num_hits1

(

Size

ir

)

const

References resmap1_.

Referenced by core::scoring::motif::MotifHash::get_matching_motifs().

Size core::scoring::motif::MotifHits::num_hits2

(

Size

ir

)

const

References resmap2_.

Referenced by core::scoring::motif::MotifHash::get_matching_motifs().

void core::scoring::motif::MotifHits::push_back

(

MotifHit const &

h

)

References resmap1_, and resmap2_.

Referenced by core::scoring::motif::MotifHash::get_matching_motifs().

void core::scoring::motif::MotifHits::push_back_raw

(

MotifHit const &

h

)

void core::scoring::motif::MotifHits::sort_by_rms_and_energy

(

)

References core::sequence::end.

int core::scoring::motif::MotifHits::stat_motifs

(

MotifHitStats &

stat

)

const

References core::scoring::motif::ResPairMotif::aa1(), core::scoring::motif::ResPairMotif::aa2(), core::scoring::motif::ResPairMotif::dssp1(), core::scoring::motif::ResPairMotif::dssp2(), core::conformation::Residue::name1(), core::scoring::pair, core::pose::Pose::residue(), protocols::hybridization::score, core::scoring::motif::ResPairMotif::ss1(), and core::scoring::motif::ResPairMotif::ss2().

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  out, MotifHits const &  h  )

friend

Member Data Documentation

int core::scoring::motif::MotifHits::paircover

mutable

Referenced by compute_metrics(), and core::scoring::motif::operator<<().

int core::scoring::motif::MotifHits::rescover

mutable

Referenced by compute_metrics(), and core::scoring::motif::operator<<().

ResMap core::scoring::motif::MotifHits::resmap1_

Referenced by hits1(), num_hits(), num_hits1(), and push_back().

ResMap core::scoring::motif::MotifHits::resmap2_

Referenced by hits2(), num_hits(), num_hits2(), and push_back().

Real core::scoring::motif::MotifHits::total_score

mutable

Referenced by compute_metrics(), and core::scoring::motif::operator<<().

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The documentation for this class was generated from the following files:

• src/core/scoring/motif/motif_hash_stuff.hh
• src/core/scoring/motif/motif_hash_stuff.cc