thermal_sampler.cc File Reference

#include <core/types.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/rna/RNA_ScoringInfo.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/database/open.hh>
#include <protocols/viewer/viewers.hh>
#include <core/pose/Pose.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <core/pose/util.hh>
#include <core/init/init.hh>
#include <core/import_pose/import_pose.hh>
#include <core/import_pose/pose_stream/PoseInputStream.hh>
#include <core/import_pose/pose_stream/PoseInputStream.fwd.hh>
#include <core/import_pose/pose_stream/PDBPoseInputStream.hh>
#include <core/import_pose/pose_stream/SilentFilePoseInputStream.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/string.functions.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <protocols/stepwise/modeler/rna/util.hh>
#include <protocols/stepwise/modeler/align/util.hh>
#include <core/io/rna/RNA_DataReader.hh>
#include <core/pose/PDBInfo.hh>
#include <protocols/recces/sampler/rna/MC_RNA_Suite.hh>
#include <protocols/recces/sampler/rna/MC_RNA_MultiSuite.hh>
#include <protocols/moves/SimulatedTempering.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/recces/sampler/rna/MC_RNA_KIC_Sampler.hh>
#include <protocols/stepwise/sampler/rna/RNA_KIC_Sampler.hh>
#include <protocols/recces/util.hh>
#include <protocols/recces/scratch/thermal_sampler.hh>
#include <core/id/TorsionID.hh>
#include <protocols/recces/sampler/MC_OneTorsion.hh>
#include <utility/io/ozstream.hh>
#include <iostream>
#include <string>
#include <utility/excn/Exceptions.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/chemical.OptionKeys.gen.hh>
#include <basic/options/keys/full_model.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <basic/options/keys/recces.OptionKeys.gen.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::recces
	protocols::recces::scratch

Functions
utility::vector1< core::Real >	protocols::recces::scratch::get_torsions (utility::vector1< core::id::TorsionID > &torsion_ids, const Pose &pose)
void	protocols::recces::scratch::set_gaussian_stdevs (utility::vector1< protocols::recces::sampler::rna::MC_RNA_KIC_SamplerOP > &internal_bb_sampler, utility::vector1< protocols::recces::sampler::MC_OneTorsionOP > &chi_sampler, sampler::rna::MC_RNA_MultiSuite &standard_bb_sampler, moves::SimulatedTempering const &tempering, core::Size const &total_rsd, core::Size const &sampled_rsd, utility::vector1< bool > is_free)