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core::import_pose::RNA_DeNovoParameters Member List

This is the complete list of members for core::import_pose::RNA_DeNovoParameters, including all inherited members.

add_cutpoint_open(Size const n)core::import_pose::RNA_DeNovoParametersinline
add_obligate_pairing_set(utility::vector1< core::Size > const &set)core::import_pose::RNA_DeNovoParametersinline
add_rna_pairing(core::pose::rna::BasePair const &rna_pairing)core::import_pose::RNA_DeNovoParametersinline
allow_insert_res() const core::import_pose::RNA_DeNovoParametersinline
allow_insert_res_core::import_pose::RNA_DeNovoParametersprivate
block_stack_above_res() const core::import_pose::RNA_DeNovoParametersinline
block_stack_above_res_core::import_pose::RNA_DeNovoParametersprivate
block_stack_below_res() const core::import_pose::RNA_DeNovoParametersinline
block_stack_below_res_core::import_pose::RNA_DeNovoParametersprivate
chain_connections() const core::import_pose::RNA_DeNovoParametersinline
chain_connections_core::import_pose::RNA_DeNovoParametersprivate
check_in_pairing_sets(utility::vector1< utility::vector1< core::Size > > pairing_sets, core::pose::rna::BasePair const &rna_pairing_check) const core::import_pose::RNA_DeNovoParameters
cutpoints_closed() const core::import_pose::RNA_DeNovoParametersinline
cutpoints_closed_core::import_pose::RNA_DeNovoParametersprivate
cutpoints_cyclize() const core::import_pose::RNA_DeNovoParametersinline
cutpoints_cyclize_core::import_pose::RNA_DeNovoParametersprivate
cutpoints_open() const core::import_pose::RNA_DeNovoParametersinline
cutpoints_open_core::import_pose::RNA_DeNovoParametersprivate
filename_core::import_pose::RNA_DeNovoParametersprivate
fiveprime_cap() const core::import_pose::RNA_DeNovoParametersinline
fiveprime_cap_core::import_pose::RNA_DeNovoParametersprivate
fold_tree_from_silent_file() const core::import_pose::RNA_DeNovoParametersinline
fold_tree_from_silent_file_core::import_pose::RNA_DeNovoParametersprivate
get_pairings_from_line(std::istringstream &line_stream, bool const in_stem)core::import_pose::RNA_DeNovoParametersprivate
is_rna_and_protein() const core::import_pose::RNA_DeNovoParametersinline
is_rna_and_protein_core::import_pose::RNA_DeNovoParametersprivate
obligate_pairing_sets() const core::import_pose::RNA_DeNovoParametersinline
obligate_pairing_sets_core::import_pose::RNA_DeNovoParametersprivate
read_chain_connection(std::istringstream &line_stream)core::import_pose::RNA_DeNovoParametersprivate
read_parameters_from_file(std::string const &filename)core::import_pose::RNA_DeNovoParametersprivate
RNA_DeNovoParameters(std::string const &filename)core::import_pose::RNA_DeNovoParameters
RNA_DeNovoParameters()core::import_pose::RNA_DeNovoParameters
rna_pairing_list() const core::import_pose::RNA_DeNovoParametersinline
rna_pairing_list_core::import_pose::RNA_DeNovoParametersprivate
rna_secstruct_legacy() const core::import_pose::RNA_DeNovoParametersinline
rna_secstruct_legacy_core::import_pose::RNA_DeNovoParametersprivate
save_res_lists_to_chain_connections_and_clear(utility::vector1< Size > &res_list1, utility::vector1< Size > &res_list2)core::import_pose::RNA_DeNovoParametersprivate
secstruct_defined() const core::import_pose::RNA_DeNovoParametersinline
secstruct_defined_core::import_pose::RNA_DeNovoParametersprivate
set_allow_insert_res(utility::vector1< core::Size > const &setting)core::import_pose::RNA_DeNovoParametersinline
set_block_stack_above_res(utility::vector1< core::Size > const &setting)core::import_pose::RNA_DeNovoParametersinline
set_block_stack_below_res(utility::vector1< core::Size > const &setting)core::import_pose::RNA_DeNovoParametersinline
set_chain_connections(utility::vector1< std::pair< utility::vector1< core::Size >, utility::vector1< core::Size > > > const &setting)core::import_pose::RNA_DeNovoParametersinline
set_cutpoints_closed(utility::vector1< core::Size > const &setting)core::import_pose::RNA_DeNovoParametersinline
set_cutpoints_cyclize(utility::vector1< core::Size > const &setting)core::import_pose::RNA_DeNovoParametersinline
set_cutpoints_open(utility::vector1< core::Size > const &setting)core::import_pose::RNA_DeNovoParametersinline
set_fiveprime_cap(utility::vector1< core::Size > const &setting)core::import_pose::RNA_DeNovoParametersinline
set_fold_tree_from_silent_file(core::kinematics::FoldTree const &fold_tree)core::import_pose::RNA_DeNovoParametersinline
set_obligate_pairing_sets(utility::vector1< utility::vector1< core::Size > > const &setting)core::import_pose::RNA_DeNovoParametersinline
set_rna_and_protein(bool const &setting)core::import_pose::RNA_DeNovoParametersinline
set_rna_pairing_list(core::pose::rna::RNA_BasePairList const &setting)core::import_pose::RNA_DeNovoParametersinline
set_rna_secstruct_legacy(std::string const &setting)core::import_pose::RNA_DeNovoParametersinline
set_stem_pairing_sets(utility::vector1< utility::vector1< core::Size > > const &setting)core::import_pose::RNA_DeNovoParametersinline
set_twoprime(utility::vector1< core::Size > const &setting)core::import_pose::RNA_DeNovoParametersinline
set_use_fold_tree_from_silent_file(bool const &setting)core::import_pose::RNA_DeNovoParametersinline
set_virtual_anchor_attachment_points(utility::vector1< core::Size > const &setting)core::import_pose::RNA_DeNovoParametersinline
stem_pairing_sets() const core::import_pose::RNA_DeNovoParametersinline
stem_pairing_sets_core::import_pose::RNA_DeNovoParametersprivate
twoprime() const core::import_pose::RNA_DeNovoParametersinline
twoprime_core::import_pose::RNA_DeNovoParametersprivate
use_fold_tree_from_silent_file() const core::import_pose::RNA_DeNovoParametersinline
use_fold_tree_from_silent_file_core::import_pose::RNA_DeNovoParametersprivate
virtual_anchor_attachment_points() const core::import_pose::RNA_DeNovoParametersinline
virtual_anchor_attachment_points_core::import_pose::RNA_DeNovoParametersprivate
~RNA_DeNovoParameters() overridecore::import_pose::RNA_DeNovoParameters
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