core::pack::annealer::SequenceSymmetricAnnealer Member List

This is the complete list of members for core::pack::annealer::SequenceSymmetricAnnealer, including all inherited members.

AnnealableGraphBaseOP typedef	core::pack::annealer::SequenceSymmetricAnnealer
bestenergy()	core::pack::annealer::SimAnnealerBase	protected
bestrotamer_at_seqpos()	core::pack::annealer::SimAnnealerBase	protected
bestrotamer_at_seqpos() const	core::pack::annealer::SimAnnealerBase	protected
calc_freq_temp	core::pack::annealer::SimAnnealerBase	protectedstatic
calc_rot_freq() const	core::pack::annealer::SimAnnealerBase	protected
clear()	core::pack::annealer::SimAnnealerBase	protected
create_corresponding_mress_for_mres() const	core::pack::annealer::SequenceSymmetricAnnealer
current_rot_index()	core::pack::annealer::SimAnnealerBase	protected
current_rot_index() const	core::pack::annealer::SimAnnealerBase	protected
FixbbRotamerSetsCOP typedef	core::pack::annealer::RotamerAssigningAnnealer
get_annealer_observer()	core::pack::annealer::SimAnnealerBase	inline
get_annealer_observer() const	core::pack::annealer::SimAnnealerBase	inline
get_calc_rot_freq() const	core::pack::annealer::SimAnnealerBase
get_hightemp() const	core::pack::annealer::SimAnnealerBase	inlineprotected
get_inneriterations() const	core::pack::annealer::SimAnnealerBase
get_lowtemp() const	core::pack::annealer::SimAnnealerBase	inlineprotected
get_outeriterations() const	core::pack::annealer::SimAnnealerBase
get_shared_residue_types(core::Size const curr_mres, utility::vector1< core::Size > const &linked_res) const	core::pack::annealer::SequenceSymmetricAnnealer	private
get_start_with_current() const	core::pack::annealer::SimAnnealerBase
get_temperature() const	core::pack::annealer::SimAnnealerBase
hightemp	core::pack::annealer::SimAnnealerBase	protectedstatic
ig_	core::pack::annealer::SequenceSymmetricAnnealer	private
lowtemp	core::pack::annealer::SimAnnealerBase	protectedstatic
maxouteriterations	core::pack::annealer::SimAnnealerBase	protectedstatic
num_rots_to_pack() const	core::pack::annealer::SimAnnealerBase	inlineprotected
num_rots_to_pack(Size setting)	core::pack::annealer::SimAnnealerBase	protected
pass_metropolis(core::PackerEnergy delta_energy) const	core::pack::annealer::SimAnnealerBase
pass_metropolis(core::PackerEnergy previous_energy, core::PackerEnergy delta_energy) const	core::pack::annealer::SimAnnealerBase
pdb_info_	core::pack::annealer::SequenceSymmetricAnnealer	private
pick_a_rotamer(int cycle)	core::pack::annealer::RotamerAssigningAnnealer
pick_a_rotamer_for_node(int node) const	core::pack::annealer::RotamerAssigningAnnealer
power_mode_	core::pack::annealer::SequenceSymmetricAnnealer	private
print_linked_residues(utility::vector1< utility::vector1< core::Size > > const &corresponding_mress_for_mres) const	core::pack::annealer::SequenceSymmetricAnnealer	private
quench() const	core::pack::annealer::SimAnnealerBase
record_annealer_trajectory(bool setting)	core::pack::annealer::SequenceSymmetricAnnealer
record_annealer_trajectory_	core::pack::annealer::SequenceSymmetricAnnealer	private
residue_subsets_	core::pack::annealer::SequenceSymmetricAnnealer	private
rot_freq()	core::pack::annealer::SimAnnealerBase	protected
rot_freq() const	core::pack::annealer::SimAnnealerBase	protected
rot_to_pack() const	core::pack::annealer::RotamerAssigningAnnealer	protected
rotamer_sets() const	core::pack::annealer::RotamerAssigningAnnealer	protected
RotamerAssigningAnnealer(int num_of_rot_to_pack, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, FixbbRotamerSetsCOP p_rotamer_set, ObjexxFCL::FArray1_int &current_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq)	core::pack::annealer::RotamerAssigningAnnealer
RotamerAssigningAnnealer(utility::vector0< int > &rot_to_pack, int num_of_rot_to_pack, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, FixbbRotamerSetsCOP p_rotamer_set, ObjexxFCL::FArray1_int &current_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq)	core::pack::annealer::RotamerAssigningAnnealer
RotamerSetsBaseCOP typedef	core::pack::annealer::SimAnnealerBase
rs_prefix_	core::pack::annealer::SequenceSymmetricAnnealer	private
run() override	core::pack::annealer::SequenceSymmetricAnnealer	virtual
scale_inneriterations(core::PackerEnergy const si)	core::pack::annealer::SimAnnealerBase	inline
scale_outeriterations(core::PackerEnergy const so)	core::pack::annealer::SimAnnealerBase	inline
search_pose_for_residue_subsets(core::pose::Pose const &pose)	core::pack::annealer::SequenceSymmetricAnnealer	private
SequenceSymmetricAnnealer(core::pose::Pose const &pose, utility::vector0< int > &rot_to_pack, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, AnnealableGraphBaseOP ig, FixbbRotamerSetsCOP rotamer_sets, ObjexxFCL::FArray1_int &current_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq, std::string const &rs_prefix)	core::pack::annealer::SequenceSymmetricAnnealer
SequenceSymmetricAnnealer(core::pose::Pose const &pose, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, AnnealableGraphBaseOP ig, FixbbRotamerSetsCOP rotamer_sets, ObjexxFCL::FArray1_int &current_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq, std::string const &rs_prefix)	core::pack::annealer::SequenceSymmetricAnnealer
SequenceSymmetricAnnealer(SequenceSymmetricAnnealer const &rhs)	core::pack::annealer::SequenceSymmetricAnnealer	private
set_annealer_observer(AnnealerObserverOP obs)	core::pack::annealer::SimAnnealerBase	inline
set_assign_state_to_all_nodes_immediately(bool setting)	core::pack::annealer::RotamerAssigningAnnealer
set_disallow_quench(bool const &setting)	core::pack::annealer::SimAnnealerBase
set_hightemp(core::PackerEnergy)	core::pack::annealer::SimAnnealerBase
set_lowtemp(core::PackerEnergy)	core::pack::annealer::SimAnnealerBase
set_not_to_quench()	core::pack::annealer::SimAnnealerBase
set_temperature(core::PackerEnergy new_temperature)	core::pack::annealer::SimAnnealerBase
set_to_quench()	core::pack::annealer::SimAnnealerBase
setup_for_linked_residues()	core::pack::annealer::SequenceSymmetricAnnealer	private
setup_iterations()	core::pack::annealer::SimAnnealerBase
setup_iterations(const int &num_of_state_changes)	core::pack::annealer::SimAnnealerBase
setup_temperature(const int &nn)	core::pack::annealer::SimAnnealerBase
setup_temperature(const ObjexxFCL::FArray1D< core::PackerEnergy > &loopenergy, int nn)	core::pack::annealer::SimAnnealerBase
SimAnnealerBase(int num_rots_to_pack, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, ObjexxFCL::FArray1_int &current_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq)	core::pack::annealer::SimAnnealerBase
start_with_current() const	core::pack::annealer::SimAnnealerBase	protected
starting_sequence_	core::pack::annealer::SequenceSymmetricAnnealer	private
trajectory_file_name(std::string const &setting)	core::pack::annealer::SequenceSymmetricAnnealer
trajectory_file_name_	core::pack::annealer::SequenceSymmetricAnnealer	private
update_shared_residue_map(core::Size const id, std::unordered_map< char, core::Size > &map) const	core::pack::annealer::SequenceSymmetricAnnealer	private
~RotamerAssigningAnnealer() override	core::pack::annealer::RotamerAssigningAnnealer
~SequenceSymmetricAnnealer() override	core::pack::annealer::SequenceSymmetricAnnealer
~SimAnnealerBase() override	core::pack::annealer::SimAnnealerBase