protocols::toolbox::match_enzdes_util::ResInteractions Class Reference

#include <EnzdesLoopsFile.hh>

Inheritance diagram for protocols::toolbox::match_enzdes_util::ResInteractions:

Public Member Functions
	ResInteractions ()
virtual	~ResInteractions ()
virtual bool	read_data (utility::io::izstream &data)
virtual void	write_data () const
core::Size	targ_res () const
utility::vector1< std::string > const &	targ_atom_names () const
utility::vector1< std::string > const &	targ_base_atom_names () const
utility::vector1< std::string > const &	targ_base2_atom_names () const
utility::vector1< std::string > const &	loopres_atom_names () const
utility::vector1< std::string > const &	loopres_base_atom_names () const
utility::vector1< std::string > const &	loopres_base2_atom_names () const
core::Size	num_interactions () const
toolbox::match_enzdes_util::GeomSampleInfoCOP	dis () const
toolbox::match_enzdes_util::GeomSampleInfoCOP	loop_ang () const
toolbox::match_enzdes_util::GeomSampleInfoCOP	targ_ang () const
toolbox::match_enzdes_util::GeomSampleInfoCOP	loop_dih () const
toolbox::match_enzdes_util::GeomSampleInfoCOP	targ_dih () const
toolbox::match_enzdes_util::GeomSampleInfoCOP	lt_dih () const

Protected Member Functions
bool	process_input_line_tokens (utility::vector1< std::string > const &tokens)
void	set_targ_res (core::Size targ_res)
void	set_targ_atom_names (utility::vector1< std::string > const &t_atom_names)
void	set_loopres_atom_names (utility::vector1< std::string > const &l_atom_names)

Private Attributes
core::Size	targ_res_
utility::vector1< std::string >	targ_atom_names_
utility::vector1< std::string >	targ_base_atom_names_
utility::vector1< std::string >	targ_base2_atom_names_
core::Size	num_interactions_
toolbox::match_enzdes_util::GeomSampleInfoOP	dis_
toolbox::match_enzdes_util::GeomSampleInfoOP	loop_ang_
toolbox::match_enzdes_util::GeomSampleInfoOP	targ_ang_
toolbox::match_enzdes_util::GeomSampleInfoOP	loop_dih_
toolbox::match_enzdes_util::GeomSampleInfoOP	targ_dih_
toolbox::match_enzdes_util::GeomSampleInfoOP	lt_dih_
utility::vector1< std::string >	loopres_atom_names_
utility::vector1< std::string >	loopres_base_atom_names_
utility::vector1< std::string >	loopres_base2_atom_names_

Constructor & Destructor Documentation

protocols::toolbox::match_enzdes_util::ResInteractions::ResInteractions

(

)

References loopres_atom_names_, and targ_atom_names_.

protocols::toolbox::match_enzdes_util::ResInteractions::~ResInteractions ( )

virtualdefault

Member Function Documentation

toolbox::match_enzdes_util::GeomSampleInfoCOP protocols::toolbox::match_enzdes_util::ResInteractions::dis

(

)

const

References dis_.

toolbox::match_enzdes_util::GeomSampleInfoCOP protocols::toolbox::match_enzdes_util::ResInteractions::loop_ang

(

)

const

References loop_ang_.

toolbox::match_enzdes_util::GeomSampleInfoCOP protocols::toolbox::match_enzdes_util::ResInteractions::loop_dih

(

)

const

References loop_dih_.

utility::vector1< std::string > const& protocols::toolbox::match_enzdes_util::ResInteractions::loopres_atom_names ( ) const

inline

References loopres_atom_names_.

utility::vector1< std::string > const& protocols::toolbox::match_enzdes_util::ResInteractions::loopres_base2_atom_names ( ) const

inline

References loopres_base2_atom_names_.

utility::vector1< std::string > const& protocols::toolbox::match_enzdes_util::ResInteractions::loopres_base_atom_names ( ) const

inline

References loopres_base_atom_names_.

toolbox::match_enzdes_util::GeomSampleInfoCOP protocols::toolbox::match_enzdes_util::ResInteractions::lt_dih

(

)

const

References lt_dih_.

core::Size protocols::toolbox::match_enzdes_util::ResInteractions::num_interactions ( ) const

inline

References num_interactions_.

bool protocols::toolbox::match_enzdes_util::ResInteractions::process_input_line_tokens ( utility::vector1< std::string > const &  tokens )

protected

References dis_, loop_ang_, loop_dih_, loopres_atom_names_, loopres_base2_atom_names_, loopres_base_atom_names_, lt_dih_, num_interactions_, targ_ang_, targ_atom_names_, targ_base2_atom_names_, targ_base_atom_names_, targ_dih_, targ_res_, and protocols::toolbox::match_enzdes_util::tr().

Referenced by read_data(), and protocols::toolbox::match_enzdes_util::CstResInteractions::read_data().

bool protocols::toolbox::match_enzdes_util::ResInteractions::read_data ( utility::io::izstream &  data )

virtual

returns false if the file fails to specify the target residue number

Reimplemented in protocols::toolbox::match_enzdes_util::CstResInteractions.

References process_input_line_tokens(), protocols::sparta::split(), targ_res_, and protocols::toolbox::match_enzdes_util::tr().

void protocols::toolbox::match_enzdes_util::ResInteractions::set_loopres_atom_names ( utility::vector1< std::string > const &  l_atom_names )

inlineprotected

References loopres_atom_names_.

void protocols::toolbox::match_enzdes_util::ResInteractions::set_targ_atom_names ( utility::vector1< std::string > const &  t_atom_names )

inlineprotected

References targ_atom_names_.

void protocols::toolbox::match_enzdes_util::ResInteractions::set_targ_res ( core::Size  targ_res )

inlineprotected

References targ_res(), and targ_res_.

toolbox::match_enzdes_util::GeomSampleInfoCOP protocols::toolbox::match_enzdes_util::ResInteractions::targ_ang

(

)

const

References targ_ang_.

utility::vector1< std::string > const& protocols::toolbox::match_enzdes_util::ResInteractions::targ_atom_names ( ) const

inline

References targ_atom_names_.

utility::vector1< std::string > const& protocols::toolbox::match_enzdes_util::ResInteractions::targ_base2_atom_names ( ) const

inline

References targ_base2_atom_names_.

utility::vector1< std::string > const& protocols::toolbox::match_enzdes_util::ResInteractions::targ_base_atom_names ( ) const

inline

References targ_base_atom_names_.

toolbox::match_enzdes_util::GeomSampleInfoCOP protocols::toolbox::match_enzdes_util::ResInteractions::targ_dih

(

)

const

References targ_dih_.

core::Size protocols::toolbox::match_enzdes_util::ResInteractions::targ_res ( ) const

inline

References targ_res_.

Referenced by protocols::toolbox::match_enzdes_util::CstResInteractions::read_data(), and set_targ_res().

void protocols::toolbox::match_enzdes_util::ResInteractions::write_data ( ) const

virtual

Reimplemented in protocols::toolbox::match_enzdes_util::CstResInteractions.

References loopres_atom_names_, num_interactions_, targ_atom_names_, targ_res_, and protocols::toolbox::match_enzdes_util::tr().

Referenced by protocols::toolbox::match_enzdes_util::CstResInteractions::write_data().

Member Data Documentation

toolbox::match_enzdes_util::GeomSampleInfoOP protocols::toolbox::match_enzdes_util::ResInteractions::dis_

private

Referenced by dis(), and process_input_line_tokens().

toolbox::match_enzdes_util::GeomSampleInfoOP protocols::toolbox::match_enzdes_util::ResInteractions::loop_ang_

private

Referenced by loop_ang(), and process_input_line_tokens().

toolbox::match_enzdes_util::GeomSampleInfoOP protocols::toolbox::match_enzdes_util::ResInteractions::loop_dih_

private

Referenced by loop_dih(), and process_input_line_tokens().

utility::vector1< std::string > protocols::toolbox::match_enzdes_util::ResInteractions::loopres_atom_names_

private

Referenced by loopres_atom_names(), process_input_line_tokens(), ResInteractions(), set_loopres_atom_names(), and write_data().

utility::vector1< std::string > protocols::toolbox::match_enzdes_util::ResInteractions::loopres_base2_atom_names_

private

Referenced by loopres_base2_atom_names(), and process_input_line_tokens().

utility::vector1< std::string > protocols::toolbox::match_enzdes_util::ResInteractions::loopres_base_atom_names_

private

Referenced by loopres_base_atom_names(), and process_input_line_tokens().

toolbox::match_enzdes_util::GeomSampleInfoOP protocols::toolbox::match_enzdes_util::ResInteractions::lt_dih_

private

Referenced by lt_dih(), and process_input_line_tokens().

core::Size protocols::toolbox::match_enzdes_util::ResInteractions::num_interactions_

private

Referenced by num_interactions(), process_input_line_tokens(), and write_data().

toolbox::match_enzdes_util::GeomSampleInfoOP protocols::toolbox::match_enzdes_util::ResInteractions::targ_ang_

private

Referenced by process_input_line_tokens(), and targ_ang().

utility::vector1< std::string > protocols::toolbox::match_enzdes_util::ResInteractions::targ_atom_names_

private

Referenced by process_input_line_tokens(), ResInteractions(), set_targ_atom_names(), targ_atom_names(), and write_data().

utility::vector1< std::string > protocols::toolbox::match_enzdes_util::ResInteractions::targ_base2_atom_names_

private

Referenced by process_input_line_tokens(), and targ_base2_atom_names().

utility::vector1< std::string > protocols::toolbox::match_enzdes_util::ResInteractions::targ_base_atom_names_

private

Referenced by process_input_line_tokens(), and targ_base_atom_names().

toolbox::match_enzdes_util::GeomSampleInfoOP protocols::toolbox::match_enzdes_util::ResInteractions::targ_dih_

private

Referenced by process_input_line_tokens(), and targ_dih().

core::Size protocols::toolbox::match_enzdes_util::ResInteractions::targ_res_

private

Referenced by process_input_line_tokens(), read_data(), set_targ_res(), targ_res(), and write_data().

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The documentation for this class was generated from the following files:

• src/protocols/toolbox/match_enzdes_util/EnzdesLoopsFile.hh
• src/protocols/toolbox/match_enzdes_util/EnzdesLoopsFile.cc