HelixHelixAngleFilter.cc File Reference

HelixHelixAngleFilter computes wither the crossing angle or distance between two TMs. More...

#include <ObjexxFCL/FArray1D.fwd.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/format.hh>
#include <basic/MetricValue.hh>
#include <basic/Tracer.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/AtomType.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/conformation/Conformation.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/Pose.hh>
#include <core/pose/symmetry/util.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/ScoreTypeManager.hh>
#include <core/types.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <map>
#include <basic/datacache/DataMap.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <protocols/scoring/Interface.hh>
#include <protocols/simple_filters/HelixHelixAngleFilter.hh>
#include <protocols/simple_filters/HelixHelixAngleFilterCreator.hh>
#include <string>
#include <utility/exit.hh>
#include <utility/tag/Tag.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <iostream>
#include <fstream>
#include <core/scoring/dssp/Dssp.hh>
#include <numeric/conversions.hh>
#include <basic/svd/SVD_Solver.hh>
#include <numeric/PCA.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/filters/filter_schemas.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::simple_filters

Functions
static basic::Tracer	protocols::simple_filters::TR ("protocols.simple_filters.HelixHelixAngleFilter")

Detailed Description

HelixHelixAngleFilter computes wither the crossing angle or distance between two TMs.

HelixHelixAngleFilter computes 1 of 3 parameters: 1. crossing angle 2. atomic distance 3. vector distance

1. the crossing angle at the closest point between two vectors representing the two helices
2. the shortest distance between two atoms on either TM
3. the shortest distance (point of approach) between the vectors representing the two helices

   Author

   Jonathan Weinstein