protocols::magnesium::MgHydrater Member List

This is the complete list of members for protocols::magnesium::MgHydrater, including all inherited members.

apply(core::pose::Pose &pose) override	protocols::magnesium::MgHydrater	virtual
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::moves::Mover	virtual
create()	protocols::moves::Mover	virtual
excise_mini_pose() const	protocols::magnesium::MgHydrater	inline
excise_mini_pose_	protocols::magnesium::MgHydrater	private
fix_fold_tree_in_excised_pose_for_mg_bound_waters(core::pose::Pose &pose, core::Size const mg_res, core::pose::Pose const &pose_full, utility::vector1< core::Size > const &slice_res) const	protocols::magnesium::MgHydrater	private
fresh_instance() const	protocols::moves::Mover	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::magnesium::MgHydrater	inlinevirtual
get_native_pose() const	protocols::moves::Mover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
hydrate_magnesium(core::pose::Pose &pose, core::Size const i)	protocols::magnesium::MgHydrater	private
hydrate_magnesium_in_pose(core::pose::Pose &pose, core::Size const i, bool force_full_shell=true)	protocols::magnesium::MgHydrater	private
hydrate_magnesium_with_orbital_frame(core::pose::Pose &pose, core::Size const i, utility::vector1< core::id::AtomID > const &nbr_atom_ids, numeric::xyzMatrix< core::Real > const &R, bool force_full_shell, core::Size &num_waters) const	protocols::magnesium::MgHydrater	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
mg_res_list_	protocols::magnesium::MgHydrater	private
mg_water_hydrogen_packer_	protocols::magnesium::MgHydrater	private
MgHydrater()	protocols::magnesium::MgHydrater
MgHydrater(utility::vector1< core::Size > const &mg_res_list)	protocols::magnesium::MgHydrater
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
name()	protocols::moves::Mover	inlinestatic
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)	protocols::moves::Mover	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_excise_mini_pose(bool const &setting)	protocols::magnesium::MgHydrater	inline
set_frame(core::Vector const &orig, core::Vector const &xyz1, core::Vector const &xyz2) const	protocols::magnesium::MgHydrater	private
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_type(std::string const &setting)	protocols::moves::Mover	inline
set_use_fast_frame_heuristic(bool const &setting)	protocols::magnesium::MgHydrater	inline
set_use_virtual_waters_as_placeholders(bool const &setting)	protocols::magnesium::MgHydrater	inline
set_verbose(bool const &setting)	protocols::magnesium::MgHydrater	inline
setup_virtual_waters_around_magnesiums(core::pose::Pose &pose)	protocols::magnesium::MgHydrater	private
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
update_full_model_info_with_new_waters(core::pose::Pose &pose, bool const expect_no_new_waters=false)	protocols::magnesium::MgHydrater	private
urs_	protocols::magnesium::MgHydrater	private
use_fast_frame_heuristic() const	protocols::magnesium::MgHydrater	inline
use_fast_frame_heuristic_	protocols::magnesium::MgHydrater	private
use_virtual_waters_as_placeholders() const	protocols::magnesium::MgHydrater	inline
use_virtual_waters_as_placeholders_	protocols::magnesium::MgHydrater	private
verbose() const	protocols::magnesium::MgHydrater	inline
verbose_	protocols::magnesium::MgHydrater	private
~MgHydrater() override	protocols::magnesium::MgHydrater