| apply(core::pose::Pose &pose) override | protocols::abinitio::FragmentSampler | virtual |
| apply_large_frags_ | protocols::abinitio::FragmentSampler | private |
| BaseClass typedef | protocols::abinitio::FragmentSampler | private |
| bQuickTest() const | protocols::abinitio::FragmentSampler | inline |
| bQuickTest_ | protocols::abinitio::FragmentSampler | private |
| check_loops(core::pose::Pose &pose) | protocols::abinitio::FragmentSampler | |
| checkpointed_cycle_block(core::pose::Pose &, StageID, void(FragmentSampler::*cycles)(core::pose::Pose &)) | protocols::abinitio::FragmentSampler | private |
| checkpoints_ | protocols::abinitio::FragmentSampler | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::abinitio::FragmentSampler | virtual |
| create() | protocols::moves::Mover | virtual |
| current_scorefxn() const | protocols::abinitio::FragmentSampler | |
| current_scorefxn(core::scoring::ScoreFunction const &scorefxn) | protocols::abinitio::FragmentSampler | protected |
| do_stage1_cycles(core::pose::Pose &pose) | protocols::abinitio::FragmentSampler | protectedvirtual |
| do_stage2_cycles(core::pose::Pose &pose) | protocols::abinitio::FragmentSampler | protectedvirtual |
| do_stage3_cycles(core::pose::Pose &pose) | protocols::abinitio::FragmentSampler | protectedvirtual |
| do_stage4_cycles(core::pose::Pose &pose) | protocols::abinitio::FragmentSampler | protectedvirtual |
| FragmentSampler(topology_broker::TopologyBrokerOP broker) | protocols::abinitio::FragmentSampler | |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_checkpoints() | protocols::abinitio::FragmentSampler | inlinevirtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::abinitio::FragmentSampler | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| id2proftag(StageID id) | protocols::abinitio::FragmentSampler | inlineprivate |
| id2proftag_ | protocols::abinitio::FragmentSampler | privatestatic |
| id2string(StageID id) | protocols::abinitio::FragmentSampler | inlineprivate |
| id2string_ | protocols::abinitio::FragmentSampler | privatestatic |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| just_smooth_cycles() const | protocols::abinitio::FragmentSampler | inline |
| just_smooth_cycles_ | protocols::abinitio::FragmentSampler | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| mc() | protocols::abinitio::FragmentSampler | inlineprotected |
| mc() const | protocols::abinitio::FragmentSampler | inlineprotected |
| mc_ | protocols::abinitio::FragmentSampler | private |
| mc_ptr() | protocols::abinitio::FragmentSampler | inlineprotected |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover(core::pose::Pose const &pose, StageID stage_id, core::scoring::ScoreFunction const &scorefxn, core::Real progress=1.0) | protocols::abinitio::FragmentSampler | protectedvirtual |
| name() | protocols::moves::Mover | inlinestatic |
| Parent typedef | protocols::abinitio::FragmentSampler | private |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| prepare_loop_in_stage3(core::pose::Pose &, core::Size, core::Size) | protocols::abinitio::FragmentSampler | protectedvirtual |
| prepare_loop_in_stage4(core::pose::Pose &, core::Size, core::Size) | protocols::abinitio::FragmentSampler | protectedvirtual |
| prepare_stage1(core::pose::Pose &pose) | protocols::abinitio::FragmentSampler | protectedvirtual |
| prepare_stage2(core::pose::Pose &pose) | protocols::abinitio::FragmentSampler | protectedvirtual |
| prepare_stage3(core::pose::Pose &pose) | protocols::abinitio::FragmentSampler | protectedvirtual |
| prepare_stage4(core::pose::Pose &pose) | protocols::abinitio::FragmentSampler | protectedvirtual |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| recover_low(core::pose::Pose &pose, StageID stage) | protocols::abinitio::FragmentSampler | protected |
| recover_low_stages_ | protocols::abinitio::FragmentSampler | private |
| register_options() | protocols::abinitio::FragmentSampler | static |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| replace_scorefxn(core::pose::Pose &pose, StageID stage, core::Real intra_stage_progress) | protocols::abinitio::FragmentSampler | protectedvirtual |
| reset_status() | protocols::moves::Mover | |
| score_stage1_ | protocols::abinitio::FragmentSampler | private |
| score_stage2_ | protocols::abinitio::FragmentSampler | private |
| score_stage3a_ | protocols::abinitio::FragmentSampler | private |
| score_stage3b_ | protocols::abinitio::FragmentSampler | private |
| score_stage4_ | protocols::abinitio::FragmentSampler | private |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_current_weight(core::scoring::ScoreType type, core::Real setting) | protocols::abinitio::FragmentSampler | protected |
| set_cycles(core::Real increase_cycles=1.0) | protocols::abinitio::FragmentSampler | |
| set_default_mc(core::scoring::ScoreFunction const &scorefxn) | protocols::abinitio::FragmentSampler | private |
| set_default_options() | protocols::abinitio::FragmentSampler | private |
| set_default_scores() | protocols::abinitio::FragmentSampler | private |
| set_defaults() | protocols::abinitio::FragmentSampler | protected |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_mc(moves::MonteCarloOP) | protocols::abinitio::FragmentSampler | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_score_weight(core::scoring::ScoreType, core::Real setting, StageID stage=ALL_STAGES) | protocols::abinitio::FragmentSampler | |
| set_stage4_cycles(core::Size stage4_cycles_new) | protocols::abinitio::FragmentSampler | inline |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| short_insert_region_ | protocols::abinitio::FragmentSampler | private |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| skip_stages_ | protocols::abinitio::FragmentSampler | private |
| stage1_cycles() const | protocols::abinitio::FragmentSampler | inline |
| stage1_cycles_ | protocols::abinitio::FragmentSampler | protected |
| stage2_cycles() const | protocols::abinitio::FragmentSampler | inline |
| stage2_cycles_ | protocols::abinitio::FragmentSampler | protected |
| stage3_cycles() const | protocols::abinitio::FragmentSampler | inline |
| stage3_cycles_ | protocols::abinitio::FragmentSampler | protected |
| stage4_cycles() const | protocols::abinitio::FragmentSampler | inline |
| stage4_cycles_ | protocols::abinitio::FragmentSampler | protected |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| temperature_ | protocols::abinitio::FragmentSampler | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| topology_broker(topology_broker::TopologyBrokerOP set) | protocols::abinitio::FragmentSampler | |
| topology_broker() | protocols::abinitio::FragmentSampler | protected |
| topology_broker_ | protocols::abinitio::FragmentSampler | private |
| total_trials_ | protocols::abinitio::FragmentSampler | private |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| ~FragmentSampler() override | protocols::abinitio::FragmentSampler | |
1.8.7