protocols::kinematic_closure::perturbers::LogFilePerturber Class Reference

Read torsion angles, bond angles, and bond lengths from a log file. More...

#include <LogFilePerturber.hh>

Inheritance diagram for protocols::kinematic_closure::perturbers::LogFilePerturber:

Public Member Functions
	LogFilePerturber (std::string path)
	Construct using given log file. More...
std::string	get_name () const override
	Return the name of this perturber. More...
void	perturb_subset (Pose const &pose, IndexList const &residues, ClosureProblemOP problem) override
Public Member Functions inherited from protocols::kinematic_closure::perturbers::Perturber
void	perturb (Pose const &pose, ClosureProblemOP problem)
	Perturb all of the non-pivot residues. More...
void	perturb_with_balance (Pose const &pose, ClosureProblemOP problem)
	Perturb all of the non-pivot residues such that detailed balance is obeyed. More...
virtual void	perturb_subset_with_balance (Pose const &pose, IndexList const &residues, ClosureProblemOP problem)
	Perturb the given residues such that detailed balance is obeyed. More...

Static Public Member Functions
static void	log_torsions (std::ostream &out, ParameterList torsions)
	Output the given torsion angles in a format that can later be read by LogFilePerturber. More...
static void	log_angles (std::ostream &out, ParameterList angles)
	Output the given bond angles in a format that can later be read by LogFilePerturber. More...
static void	log_lengths (std::ostream &out, ParameterList lengths)
	Output the given bond lengths in a format that can later be read by LogFilePerturber. More...

Private Attributes
ParameterMatrix	torsion_angles_
ParameterMatrix	bond_angles_
ParameterMatrix	bond_lengths_
core::Size	iteration_

Detailed Description

Read torsion angles, bond angles, and bond lengths from a log file.

This perturber is meant to be used as a debugging aid.

Constructor & Destructor Documentation

protocols::kinematic_closure::perturbers::LogFilePerturber::LogFilePerturber

(

std::string

path

)

Construct using given log file.

References protocols::sparta::split().

Member Function Documentation

std::string protocols::kinematic_closure::perturbers::LogFilePerturber::get_name ( ) const

inlineoverridevirtual

Return the name of this perturber.

Implements protocols::kinematic_closure::perturbers::Perturber.

void protocols::kinematic_closure::perturbers::LogFilePerturber::log_angles ( std::ostream &  out, ParameterList  angles  )

static

Output the given bond angles in a format that can later be read by LogFilePerturber.

void protocols::kinematic_closure::perturbers::LogFilePerturber::log_lengths ( std::ostream &  out, ParameterList  lengths  )

static

Output the given bond lengths in a format that can later be read by LogFilePerturber.

void protocols::kinematic_closure::perturbers::LogFilePerturber::log_torsions ( std::ostream &  out, ParameterList  torsions  )

static

Output the given torsion angles in a format that can later be read by LogFilePerturber.

void protocols::kinematic_closure::perturbers::LogFilePerturber::perturb_subset ( Pose const &  pose, IndexList const &  residues, ClosureProblemOP  problem  )

overridevirtual

Implements protocols::kinematic_closure::perturbers::Perturber.

References core::sequence::end.

Member Data Documentation

ParameterMatrix protocols::kinematic_closure::perturbers::LogFilePerturber::bond_angles_

private

ParameterMatrix protocols::kinematic_closure::perturbers::LogFilePerturber::bond_lengths_

private

core::Size protocols::kinematic_closure::perturbers::LogFilePerturber::iteration_

private

ParameterMatrix protocols::kinematic_closure::perturbers::LogFilePerturber::torsion_angles_

private

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The documentation for this class was generated from the following files:

• src/protocols/kinematic_closure/perturbers/LogFilePerturber.hh
• src/protocols/kinematic_closure/perturbers/LogFilePerturber.cc