| apply(core::pose::Pose &pose) override | protocols::hybridization::CartesianSampler | virtual |
| apply_constraints(core::pose::Pose &pose) | protocols::hybridization::CartesianSampler | protected |
| apply_fragcsts(core::pose::Pose &working_frag, core::pose::Pose const &pose, core::Size start) | protocols::hybridization::CartesianSampler | protected |
| apply_frame(core::pose::Pose &pose, core::fragment::Frame &frame) | protocols::hybridization::CartesianSampler | |
| apply_transform(core::pose::Pose &frag, core::Vector const &preT, core::Vector const &postT, numeric::xyzMatrix< core::Real > const &R) | protocols::hybridization::CartesianSampler | protected |
| automode_scorecut_ | protocols::hybridization::CartesianSampler | private |
| bbmove_ | protocols::hybridization::CartesianSampler | private |
| CartesianSampler() | protocols::hybridization::CartesianSampler | |
| CartesianSampler(utility::vector1< core::fragment::FragSetOP > fragments_in) | protocols::hybridization::CartesianSampler | |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::hybridization::CartesianSampler | virtual |
| compute_fragment_bias(core::pose::Pose &pose) | protocols::hybridization::CartesianSampler | protected |
| create() | protocols::moves::Mover | virtual |
| cumulate_prob_ | protocols::hybridization::CartesianSampler | private |
| debug_ | protocols::hybridization::CartesianSampler | private |
| dump_pdb_ | protocols::hybridization::CartesianSampler | private |
| dump_pdb_tag_ | protocols::hybridization::CartesianSampler | private |
| exclude_residues_ | protocols::hybridization::CartesianSampler | private |
| fa_scorefxn_ | protocols::hybridization::CartesianSampler | private |
| force_ss_ | protocols::hybridization::CartesianSampler | private |
| frag_bias_ | protocols::hybridization::CartesianSampler | private |
| frag_sizes_ | protocols::hybridization::CartesianSampler | private |
| fragment_bias_strategies_ | protocols::hybridization::CartesianSampler | private |
| fragments_ | protocols::hybridization::CartesianSampler | private |
| freeze_endpoints_ | protocols::hybridization::CartesianSampler | private |
| fresh_instance() const override | protocols::hybridization::CartesianSampler | virtual |
| fullatom_ | protocols::hybridization::CartesianSampler | private |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::hybridization::CartesianSampler | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_transform(core::pose::Pose const &pose, core::pose::Pose const &frag, core::Size startpos, core::Vector &preT, core::Vector &postT, numeric::xyzMatrix< core::Real > &R) | protocols::hybridization::CartesianSampler | protected |
| get_type() const | protocols::moves::Mover | inline |
| include_residues_ | protocols::hybridization::CartesianSampler | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init() | protocols::hybridization::CartesianSampler | |
| input_as_ref_ | protocols::hybridization::CartesianSampler | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| library_ | protocols::hybridization::CartesianSampler | private |
| loops_ | protocols::hybridization::CartesianSampler | private |
| mc_scorefxn_ | protocols::hybridization::CartesianSampler | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::hybridization::CartesianSampler | static |
| name() | protocols::moves::Mover | inlinestatic |
| ncycles_ | protocols::hybridization::CartesianSampler | private |
| nfrags_ | protocols::hybridization::CartesianSampler | private |
| nminsteps_ | protocols::hybridization::CartesianSampler | private |
| overlap_ | protocols::hybridization::CartesianSampler | private |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override | protocols::hybridization::CartesianSampler | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::hybridization::CartesianSampler | static |
| recover_low_ | protocols::hybridization::CartesianSampler | private |
| ref_cst_maxdist_ | protocols::hybridization::CartesianSampler | private |
| ref_cst_weight_ | protocols::hybridization::CartesianSampler | private |
| ref_model_ | protocols::hybridization::CartesianSampler | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| residues_to_exclude_ | protocols::hybridization::CartesianSampler | private |
| residues_to_include_ | protocols::hybridization::CartesianSampler | private |
| restore_csts_ | protocols::hybridization::CartesianSampler | private |
| rms_cutoff_ | protocols::hybridization::CartesianSampler | private |
| rsd_wdw_to_refine_ | protocols::hybridization::CartesianSampler | private |
| score_threshold_ | protocols::hybridization::CartesianSampler | private |
| scorefxn_ | protocols::hybridization::CartesianSampler | private |
| selection_bias_ | protocols::hybridization::CartesianSampler | private |
| set_bbmove(bool bbmove_in) | protocols::hybridization::CartesianSampler | inline |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_fa_scorefunction(core::scoring::ScoreFunctionOP scorefxn_in) | protocols::hybridization::CartesianSampler | inline |
| set_frag_sizes(utility::vector1< core::Size > const &frag_sizes_in) | protocols::hybridization::CartesianSampler | inline |
| set_fullatom(bool fullatom_in) | protocols::hybridization::CartesianSampler | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_mc_scorefunction(core::scoring::ScoreFunctionOP scorefxn_in) | protocols::hybridization::CartesianSampler | inline |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_ncycles(core::Size ncycles_in) | protocols::hybridization::CartesianSampler | inline |
| set_nfrags(core::Size nfrags_in) | protocols::hybridization::CartesianSampler | inline |
| set_nminsteps(core::Size nminsteps_in) | protocols::hybridization::CartesianSampler | inline |
| set_overlap(core::Size overlap_in) | protocols::hybridization::CartesianSampler | inline |
| set_restore_csts(bool restore_csts_in) | protocols::hybridization::CartesianSampler | inline |
| set_rms_cutoff(core::Real rms_cutoff_in) | protocols::hybridization::CartesianSampler | inline |
| set_scorefunction(core::scoring::ScoreFunctionOP scorefxn_in) | protocols::hybridization::CartesianSampler | inline |
| set_strategy(std::string strategy_in) | protocols::hybridization::CartesianSampler | inline |
| set_temp(core::Real temp_in) | protocols::hybridization::CartesianSampler | inline |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| set_userpos(core::select::residue_selector::ResidueSelectorCOP const &user_pos_in) | protocols::hybridization::CartesianSampler | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| temp_ | protocols::hybridization::CartesianSampler | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| update_fragment_library_pointers() | protocols::hybridization::CartesianSampler | protected |
| user_pos_ | protocols::hybridization::CartesianSampler | private |
| wdw_to_freeze_ | protocols::hybridization::CartesianSampler | private |
1.8.7