| AACompositionEnergySetup() | core::scoring::aa_composition_energy::AACompositionEnergySetup | |
| AACompositionEnergySetup(AACompositionEnergySetup const &src) | core::scoring::aa_composition_energy::AACompositionEnergySetup | |
| check_data() const | core::scoring::aa_composition_energy::AACompositionEnergySetup | private |
| clone() const | core::scoring::aa_composition_energy::AACompositionEnergySetup | virtual |
| const_out_of_bounds_func(bool const before, core::Size const index) const | core::scoring::aa_composition_energy::AACompositionEnergySetup | inlineprivate |
| expected_by_properties_absolute(core::Size const index) const | core::scoring::aa_composition_energy::AACompositionEnergySetup | inline |
| expected_by_properties_absolute_ | core::scoring::aa_composition_energy::AACompositionEnergySetup | private |
| expected_by_properties_fraction(core::Size const index) const | core::scoring::aa_composition_energy::AACompositionEnergySetup | inline |
| expected_by_properties_fraction_ | core::scoring::aa_composition_energy::AACompositionEnergySetup | private |
| fract_out_of_bounds_func(core::Size const index, core::Real const &delta_fract, bool const before) const | core::scoring::aa_composition_energy::AACompositionEnergySetup | inlineprivate |
| fract_property_deviation_ranges_ | core::scoring::aa_composition_energy::AACompositionEnergySetup | private |
| fract_property_penalty(core::Real const delta_fract, core::Size const property_set_index) const | core::scoring::aa_composition_energy::AACompositionEnergySetup | inline |
| get_tailfunction_from_name(std::string const &name) const | core::scoring::aa_composition_energy::AACompositionEnergySetup | |
| get_tailfunction_name(TailFunction const tf) const | core::scoring::aa_composition_energy::AACompositionEnergySetup | |
| initialize_from_file(std::string const &filename) | core::scoring::aa_composition_energy::AACompositionEnergySetup | |
| initialize_from_file_contents(std::string const &filecontents) | core::scoring::aa_composition_energy::AACompositionEnergySetup | |
| interpolate_property_penalties(core::Real const &delta_fract, core::Size const index) const | core::scoring::aa_composition_energy::AACompositionEnergySetup | inlineprivate |
| linear_fract_out_of_bounds_func(bool const before, core::Size const index, core::Real const &delta_fract) const | core::scoring::aa_composition_energy::AACompositionEnergySetup | inlineprivate |
| linear_out_of_bounds_func(bool const before, core::Size const index, signed long const delta_expected) const | core::scoring::aa_composition_energy::AACompositionEnergySetup | inlineprivate |
| n_property_sets() const | core::scoring::aa_composition_energy::AACompositionEnergySetup | inline |
| out_of_bounds_func(core::Size const index, signed long const delta_expected, bool const before) const | core::scoring::aa_composition_energy::AACompositionEnergySetup | inlineprivate |
| parse_a_penalty_definition(utility::vector1< std::string > const &lines) | core::scoring::aa_composition_energy::AACompositionEnergySetup | private |
| parse_penalty_definitions(utility::vector1< std::string > const &lines) | core::scoring::aa_composition_energy::AACompositionEnergySetup | private |
| property_deviation_ranges_ | core::scoring::aa_composition_energy::AACompositionEnergySetup | private |
| property_penalties_ | core::scoring::aa_composition_energy::AACompositionEnergySetup | private |
| property_penalty(signed long const delta_expected, core::Size const property_set_index) const | core::scoring::aa_composition_energy::AACompositionEnergySetup | inline |
| property_penalty_fracts_ | core::scoring::aa_composition_energy::AACompositionEnergySetup | private |
| property_set_indices_matching_residue(core::chemical::ResidueType const &rsd_type, utility::vector1< core::Size > &indices_out) const | core::scoring::aa_composition_energy::AACompositionEnergySetup | inline |
| property_sets_ | core::scoring::aa_composition_energy::AACompositionEnergySetup | private |
| property_tailfunctions_ | core::scoring::aa_composition_energy::AACompositionEnergySetup | private |
| quadratic_fract_out_of_bounds_func(bool const before, core::Size const index, core::Real const &delta_fract) const | core::scoring::aa_composition_energy::AACompositionEnergySetup | inlineprivate |
| quadratic_out_of_bounds_func(bool const before, core::Size const index, signed long const delta_expected) const | core::scoring::aa_composition_energy::AACompositionEnergySetup | inlineprivate |
| report() const | core::scoring::aa_composition_energy::AACompositionEnergySetup | |
| reset() | core::scoring::aa_composition_energy::AACompositionEnergySetup | |
| use_fract_expected_values_any() const | core::scoring::aa_composition_energy::AACompositionEnergySetup | |
| use_fract_ranges(core::Size const index) const | core::scoring::aa_composition_energy::AACompositionEnergySetup | inline |
| use_fract_ranges_ | core::scoring::aa_composition_energy::AACompositionEnergySetup | private |
| use_fract_ranges_any() const | core::scoring::aa_composition_energy::AACompositionEnergySetup | |
| ~AACompositionEnergySetup() override | core::scoring::aa_composition_energy::AACompositionEnergySetup | |
1.8.7