util.cc File Reference

#include <protocols/stepwise/modeler/packer/util.hh>
#include <protocols/stepwise/modeler/packer/StepWisePacker.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <protocols/stepwise/modeler/options/StepWiseModelerOptions.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/rna/RNA_Info.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/EnergyGraph.hh>
#include <core/scoring/Energies.hh>
#include <utility/tools/make_vector1.hh>
#include <basic/Tracer.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::stepwise
	protocols::stepwise::modeler
	protocols::stepwise::modeler::packer

Functions
static basic::Tracer	TR ("protocols.stepwise.modeler.packer.util")
StepWisePackerOP	protocols::stepwise::modeler::packer::get_packer (core::scoring::ScoreFunctionCOP pack_scorefxn, utility::vector1< core::Size > const &moving_res_list, protocols::stepwise::modeler::options::StepWiseModelerOptionsCOP options)
utility::vector1< core::Size >	protocols::stepwise::modeler::packer::figure_out_working_interface_res (core::pose::Pose const &pose, core::Size const working_moving_res, bool const pack_protein_side_chains)
utility::vector1< core::Size >	protocols::stepwise::modeler::packer::figure_out_working_interface_res (core::pose::Pose const &pose, utility::vector1< core::Size > const &working_moving_res_list, bool const pack_protein_side_chains)
bool	protocols::stepwise::modeler::packer::check_o2prime_contact (pose::Pose const &pose, core::Size const i, core::Size const j)
void	protocols::stepwise::modeler::packer::figure_out_working_interface_res (core::pose::Pose const &pose, core::Size const working_moving_res, utility::vector1< bool > &interface_res, utility::vector1< utility::vector1< bool > > &checked_pair, bool const pack_protein_side_chains)

Detailed Description

Author

Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu

Function Documentation

static basic::Tracer TR ( "protocols.stepwise.modeler.packer.util"  )

static