CDRH3Modeler.cc File Reference

models CDR H3 loop using loop modeling More...

#include <protocols/antibody_legacy/CDRH3Modeler.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/chemical/VariantType.hh>
#include <core/fragment/BBTorsionSRFD.hh>
#include <core/fragment/FragData.hh>
#include <core/fragment/FragSet.hh>
#include <core/id/types.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/pack/rotamer_set/UnboundRotamersOperation.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/NoRepackDisulfides.hh>
#include <core/pack/task/operation/OperateOnCertainResidues.hh>
#include <core/pack/task/operation/ResFilters.hh>
#include <core/pack/task/operation/ResLvlTaskOperations.hh>
#include <protocols/simple_task_operations/RestrictToInterface.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/variant_util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/pack/dunbrack/RotamerConstraint.hh>
#include <basic/Tracer.hh>
#include <numeric/numeric.functions.hh>
#include <numeric/random/random.hh>
#include <numeric/xyz.functions.hh>
#include <protocols/simple_moves/FragmentMover.hh>
#include <protocols/loops/loop_closure/ccd/CCDLoopClosureMover.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/loops/loop_mover/LoopMover.hh>
#include <protocols/simple_moves/BackboneMover.hh>
#include <protocols/moves/ChangeFoldTreeMover.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/moves/RepeatMover.hh>
#include <protocols/simple_moves/ReturnSidechainMover.hh>
#include <protocols/minimization_packing/RotamerTrialsMover.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <utility/exit.hh>
#include <utility/io/izstream.hh>
#include <utility/pointer/owning_ptr.hh>
#include <core/import_pose/import_pose.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::antibody_legacy

Functions
static basic::Tracer	TR ("protocols.antibody.CDRH3Modeler")
void	protocols::antibody_legacy::simple_one_loop_fold_tree (pose::Pose &pose_in, loops::Loop const &loop)
void	protocols::antibody_legacy::simple_fold_tree (pose::Pose &pose_in, core::Size jumppoint1, core::Size cutpoint, core::Size jumppoint2)
void	protocols::antibody_legacy::read_H3_cter_fragment (Antibody &antibody_in, utility::vector1< fragment::FragData > &H3_base_library, bool is_camelid)

Detailed Description

models CDR H3 loop using loop modeling

Author

Aroop Sircar (aroop.nosp@m.sirc.nosp@m.ar@ya.nosp@m.hoo..nosp@m.com)

Function Documentation

static basic::Tracer TR ( "protocols.antibody.CDRH3Modeler"  )

static