Rosetta  2021.16
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
core::scoring::GenericBondedPotential Member List

This is the complete list of members for core::scoring::GenericBondedPotential, including all inherited members.

angle_lookup_core::scoring::GenericBondedPotentialprivate
angle_pot_core::scoring::GenericBondedPotentialprivate
bond_lookup_core::scoring::GenericBondedPotentialprivate
bond_pot_core::scoring::GenericBondedPotentialprivate
defined_atom_types_core::scoring::GenericBondedPotentialprivate
eval_residue_energy_and_derivative_angle(conformation::Residue const &rsd, utility::vector1< DerivVectorPair > &atom_derivs, Real const weight=0.0, bool const calc_deriv=false) const core::scoring::GenericBondedPotentialprivate
eval_residue_energy_and_derivative_bond(conformation::Residue const &rsd, utility::vector1< DerivVectorPair > &atom_derivs, Real const weight=0.0, bool const calc_deriv=false) const core::scoring::GenericBondedPotentialprivate
eval_residue_energy_and_derivative_improper(conformation::Residue const &rsd, utility::vector1< DerivVectorPair > &atom_derivs, ResidueExclParamsCOP excl_params, Real const weight=0.0, bool const calc_deriv=false) const core::scoring::GenericBondedPotentialprivate
eval_residue_energy_and_derivative_torsion(conformation::Residue const &rsd, utility::vector1< DerivVectorPair > &atom_derivs, ResidueExclParamsCOP excl_params, Real const weight=0.0, bool const calc_deriv=false) const core::scoring::GenericBondedPotentialprivate
eval_residue_pair_energy_and_derivative_angle(conformation::Residue const &rsd1, conformation::Residue const &rsd2, utility::vector1< DerivVectorPair > &atom_derivs_r1, utility::vector1< DerivVectorPair > &atom_derivs_r2, Real const weight=0.0, bool const calc_deriv=false) const core::scoring::GenericBondedPotentialprivate
eval_residue_pair_energy_and_derivative_bond(conformation::Residue const &rsd1, conformation::Residue const &rsd2, utility::vector1< DerivVectorPair > &atom_derivs_r1, utility::vector1< DerivVectorPair > &atom_derivs_r2, Real const weight=0.0, bool const calc_deriv=false) const core::scoring::GenericBondedPotentialprivate
eval_residue_pair_energy_and_derivative_improper(conformation::Residue const &rsd1, conformation::Residue const &rsd2, utility::vector1< DerivVectorPair > &atom_derivs_r1, utility::vector1< DerivVectorPair > &atom_derivs_r2, ResidueExclParamsCOP excl_info_res1, ResidueExclParamsCOP excl_info_res2, Real const weight=0.0, bool const calc_deriv=false) const core::scoring::GenericBondedPotentialprivate
eval_residue_pair_energy_and_derivative_torsion(conformation::Residue const &rsd1, conformation::Residue const &rsd2, utility::vector1< DerivVectorPair > &atom_derivs_r1, utility::vector1< DerivVectorPair > &atom_derivs_r2, ResidueExclParamsCOP excl_info_res1, ResidueExclParamsCOP excl_info_res2, Real const weight=0.0, bool const calc_deriv=false) const core::scoring::GenericBondedPotentialprivate
GenericBondedPotential()core::scoring::GenericBondedPotential
improper_lookup_core::scoring::GenericBondedPotentialprivate
improper_pot_core::scoring::GenericBondedPotentialprivate
lookup_angle_params(Size type1, Size type2, Size type3) const core::scoring::GenericBondedPotentialprivate
lookup_bond_params(Size type1, Size type2) const core::scoring::GenericBondedPotentialprivate
lookup_improper_params(Size type1, Size type2, Size type3, Size type4, int &idx2, int &idx3, int &idx4) const core::scoring::GenericBondedPotentialprivate
lookup_tors_params(core::chemical::BondName bn, core::chemical::BondRingness br, Size type1, Size type2, Size type3, Size type4) const core::scoring::GenericBondedPotentialprivate
modify_tors_params(std::string const atm1, std::string const atm2, std::string bondtype, std::string const atm3, std::string const atm4, core::Real k1_in, core::Real k2_in, core::Real k3_in, core::Real k4_in, core::Real f1_in=0.0, core::Real f2_in=0.0, core::Real f3_in=0.0, core::Real f4_in=0.0, core::Real offset=0.0)core::scoring::GenericBondedPotentialprivate
modify_torsion_params_from_cmd_line()core::scoring::GenericBondedPotentialprivate
name_index_mapcore::scoring::GenericBondedPotentialprivate
natomtypescore::scoring::GenericBondedPotentialprivate
null_sp_paramcore::scoring::GenericBondedPotentialprivatestatic
null_tors_paramcore::scoring::GenericBondedPotentialprivatestatic
read_database(std::string filename)core::scoring::GenericBondedPotentialprivate
residue_derivatives(conformation::Residue const &rsd, pose::Pose const &pose, EnergyMap const &weights, utility::vector1< DerivVectorPair > &atom_derivs, bool const &score_full, bool const &score_hybrid) const core::scoring::GenericBondedPotential
residue_energy(conformation::Residue const &rsd, pose::Pose const &pose, EnergyMap &emap, bool const &score_full, bool const &score_hybrid) const core::scoring::GenericBondedPotential
residue_pair_derivatives(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap const &weights, utility::vector1< DerivVectorPair > &atom_derivs_r1, utility::vector1< DerivVectorPair > &atom_derivs_r2, bool const &score_full, bool const &score_hybrid) const core::scoring::GenericBondedPotential
residue_pair_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap, bool const &score_full, bool const &score_hybrid) const core::scoring::GenericBondedPotential
setup_for_scoring(pose::Pose &pose, scoring::ScoreFunction const &sfxn, bool const &score_full=false, bool const &score_hybrid=true) const core::scoring::GenericBondedPotential
tors_lookup_core::scoring::GenericBondedPotentialprivate
tors_pot_core::scoring::GenericBondedPotentialprivate
Generated on Fri Apr 23 2021 03:44:44 for Rosetta by   doxygen 1.8.7