| calc_point_mut_filters(Pose const &start_pose, utility::vector1< std::pair< core::Size, utility::vector1< std::pair< core::chemical::AA, utility::vector1< core::Real > > > > > &seqpos_aa_vals_vec) | protocols::matdes::MatDesPointMutationCalculator | |
| calc_point_mut_filters(Pose const &start_pose, utility::vector1< std::pair< core::Size, utility::vector1< std::pair< core::chemical::AA, core::Real > > > > &seqpos_aa_val_vec) | protocols::matdes::MatDesPointMutationCalculator | |
| clone() const | protocols::matdes::MatDesPointMutationCalculator | |
| design_shell_ | protocols::matdes::MatDesPointMutationCalculator | private |
| dump_pdb() const | protocols::matdes::MatDesPointMutationCalculator | |
| dump_pdb(bool const dump_pdb) | protocols::matdes::MatDesPointMutationCalculator | |
| dump_pdb_ | protocols::matdes::MatDesPointMutationCalculator | private |
| eval_filters(core::pose::Pose &pose, bool &filter_pass, utility::vector1< core::Real > &vals, bool always_eval) | protocols::matdes::MatDesPointMutationCalculator | |
| filter_thresholds() const | protocols::matdes::MatDesPointMutationCalculator | |
| filter_thresholds(utility::vector1< std::pair< std::string, core::Real > > filter_thresholds) | protocols::matdes::MatDesPointMutationCalculator | |
| filter_thresholds_ | protocols::matdes::MatDesPointMutationCalculator | private |
| filters() const | protocols::matdes::MatDesPointMutationCalculator | |
| filters(utility::vector1< protocols::filters::FilterOP > filters) | protocols::matdes::MatDesPointMutationCalculator | |
| filters_ | protocols::matdes::MatDesPointMutationCalculator | private |
| force_natro(bool const force_natro) | protocols::matdes::MatDesPointMutationCalculator | |
| force_natro() const | protocols::matdes::MatDesPointMutationCalculator | |
| force_natro_ | protocols::matdes::MatDesPointMutationCalculator | private |
| MatDesPointMutationCalculator() | protocols::matdes::MatDesPointMutationCalculator | |
| MatDesPointMutationCalculator(core::pack::task::TaskFactoryOP task_factory, core::scoring::ScoreFunctionOP scorefxn, protocols::moves::MoverOP relax_mover, utility::vector1< protocols::filters::FilterOP > filters, utility::vector1< std::pair< std::string, core::Real > > filter_thresholds, utility::vector1< protocols::simple_filters::TaskAwareScoreTypeFilterOP > set_task_for_filters, utility::vector1< std::string > sample_types, bool dump_pdb=false, bool rtmin=false, bool parallel=false, core::Real design_shell=-1.0, core::Real repack_shell=8.0, bool force_natro=false) | protocols::matdes::MatDesPointMutationCalculator | |
| MatDesPointMutationCalculator(core::pack::task::TaskFactoryOP task_factory, core::scoring::ScoreFunctionOP scorefxn, protocols::moves::MoverOP relax_mover, protocols::filters::FilterOP filter, std::pair< std::string, core::Real > filter_threshold, protocols::simple_filters::TaskAwareScoreTypeFilterOP set_task_for_filter, std::string sample_type="low", bool dump_pdb=false, bool rtmin=false, bool parallel=false, core::Real design_shell=-1.0, core::Real repack_shell=8.0, bool force_natro=false) | protocols::matdes::MatDesPointMutationCalculator | |
| mutate_and_relax(core::pose::Pose &pose, core::Size const &resi, core::chemical::AA const &target_aa) | protocols::matdes::MatDesPointMutationCalculator | |
| mutate_and_relax(core::pose::Pose &pose, core::Size const &resi, core::chemical::AA const &target_aa, protocols::minimization_packing::GreenPackerOP green_packer) | protocols::matdes::MatDesPointMutationCalculator | |
| new_tasks(utility::vector1< core::pack::task::PackerTaskOP > new_tasks) | protocols::matdes::MatDesPointMutationCalculator | |
| new_tasks() const | protocols::matdes::MatDesPointMutationCalculator | |
| new_tasks_ | protocols::matdes::MatDesPointMutationCalculator | private |
| parallel(bool const r) | protocols::matdes::MatDesPointMutationCalculator | |
| parallel() const | protocols::matdes::MatDesPointMutationCalculator | |
| parallel_ | protocols::matdes::MatDesPointMutationCalculator | private |
| Pose typedef | protocols::matdes::MatDesPointMutationCalculator | |
| reference_pose() const | protocols::matdes::MatDesPointMutationCalculator | |
| reference_pose(core::pose::PoseOP const reference_pose) | protocols::matdes::MatDesPointMutationCalculator | |
| reference_pose_ | protocols::matdes::MatDesPointMutationCalculator | private |
| relax_mover() const | protocols::matdes::MatDesPointMutationCalculator | |
| relax_mover(protocols::moves::MoverOP relax_mover) | protocols::matdes::MatDesPointMutationCalculator | |
| relax_mover_ | protocols::matdes::MatDesPointMutationCalculator | private |
| repack_shell_ | protocols::matdes::MatDesPointMutationCalculator | private |
| rtmin(bool const r) | protocols::matdes::MatDesPointMutationCalculator | |
| rtmin() const | protocols::matdes::MatDesPointMutationCalculator | |
| rtmin_ | protocols::matdes::MatDesPointMutationCalculator | private |
| sample_types() const | protocols::matdes::MatDesPointMutationCalculator | |
| sample_types(utility::vector1< std::string > const &sample_types) | protocols::matdes::MatDesPointMutationCalculator | |
| sample_types_ | protocols::matdes::MatDesPointMutationCalculator | private |
| scorefxn() const | protocols::matdes::MatDesPointMutationCalculator | |
| scorefxn(core::scoring::ScoreFunctionOP scorefxn) | protocols::matdes::MatDesPointMutationCalculator | |
| scorefxn_ | protocols::matdes::MatDesPointMutationCalculator | private |
| set_design_shell(core::Real dz_shell) | protocols::matdes::MatDesPointMutationCalculator | |
| set_repack_shell(core::Real rp_shell) | protocols::matdes::MatDesPointMutationCalculator | |
| set_task_for_filters() const | protocols::matdes::MatDesPointMutationCalculator | |
| set_task_for_filters(utility::vector1< protocols::simple_filters::TaskAwareScoreTypeFilterOP > set_task_for_filters) | protocols::matdes::MatDesPointMutationCalculator | |
| set_task_for_filters_ | protocols::matdes::MatDesPointMutationCalculator | private |
| stored_task_names(utility::vector1< std::string > stored_task_names) | protocols::matdes::MatDesPointMutationCalculator | |
| stored_task_names() const | protocols::matdes::MatDesPointMutationCalculator | |
| stored_task_names_ | protocols::matdes::MatDesPointMutationCalculator | private |
| task_factory() const | protocols::matdes::MatDesPointMutationCalculator | |
| task_factory(core::pack::task::TaskFactoryOP task_factory) | protocols::matdes::MatDesPointMutationCalculator | |
| task_factory_ | protocols::matdes::MatDesPointMutationCalculator | private |
| ~MatDesPointMutationCalculator() override | protocols::matdes::MatDesPointMutationCalculator | |
1.8.7