Rosetta: protocols::mpi_refinement::Clusterer Class Reference

#include <Clusterer.hh>

Public Member Functions
	Clusterer ()

	~Clusterer ()

void	set_defaults ()

protocols::wum::SilentStructStore	apply (protocols::wum::SilentStructStore structs, core::Size const ncluster, core::Real const dist_cut) const

Private Member Functions
bool	get_distance (core::io::silent::SilentStructOP ss1, core::io::silent::SilentStructOP ss2, core::Real &distance, core::Real const dist_cut) const

protocols::wum::SilentStructStore	energy_sort_cluster (protocols::wum::SilentStructStore structs, core::Size const ncluster, core::Real const dist_cut=2.0) const

Private Attributes
std::string	similarity_method_

std::string	similarity_measure_

core::Real	simtol_

std::string	sim_replace_obj_

std::string	method_

Constructor & Destructor Documentation

protocols::mpi_refinement::Clusterer::Clusterer ( )

References set_defaults().

protocols::mpi_refinement::Clusterer::~Clusterer ( )

default

Member Function Documentation

protocols::wum::SilentStructStore protocols::mpi_refinement::Clusterer::apply	(	protocols::wum::SilentStructStore	structs,
		core::Size const	ncluster,
		core::Real const	dist_cut
	)		const

References energy_sort_cluster(), and method_.

Referenced by protocols::mpi_refinement::MPI_Refine_Master::process_round().

protocols::wum::SilentStructStore protocols::mpi_refinement::Clusterer::energy_sort_cluster	(	protocols::wum::SilentStructStore	structs,
		core::Size const	ncluster,
		core::Real const	dist_cut = `2.0`
	)		const

private

References protocols::wum::SilentStructStore::add(), protocols::mpi_refinement::distance(), get_distance(), protocols::wum::SilentStructStore::get_struct(), sim_replace_obj_, protocols::wum::SilentStructStore::size(), and protocols::wum::SilentStructStore::sort_by().

Referenced by apply().

bool protocols::mpi_refinement::Clusterer::get_distance	(	core::io::silent::SilentStructOP	ss1,
		core::io::silent::SilentStructOP	ss2,
		core::Real &	distance,
		core::Real const	dist_cut
	)		const

private

References protocols::mpi_refinement::CA_Sscore(), protocols::mpi_refinement::loopstring_to_loopvector(), and similarity_measure_.

Referenced by energy_sort_cluster().

void protocols::mpi_refinement::Clusterer::set_defaults ( )

References method_, sim_replace_obj_, similarity_measure_, similarity_method_, and simtol_.

Referenced by Clusterer().

Member Data Documentation

std::string protocols::mpi_refinement::Clusterer::method_

private

Referenced by apply(), and set_defaults().

std::string protocols::mpi_refinement::Clusterer::sim_replace_obj_

private

Referenced by energy_sort_cluster(), and set_defaults().

std::string protocols::mpi_refinement::Clusterer::similarity_measure_

private

Referenced by get_distance(), and set_defaults().

std::string protocols::mpi_refinement::Clusterer::similarity_method_

private

Referenced by set_defaults().

core::Real protocols::mpi_refinement::Clusterer::simtol_

private

Referenced by set_defaults().

The documentation for this class was generated from the following files:

src/protocols/mpi_refinement/Clusterer.hh
src/protocols/mpi_refinement/Clusterer.cc