protocols::constraints_additional::BindingSiteConstraint Member List

This is the complete list of members for protocols::constraints_additional::BindingSiteConstraint, including all inherited members.

atms_	protocols::constraints_additional::BindingSiteConstraint	private
atom(core::Size const n) const override	protocols::constraints_additional::BindingSiteConstraint	virtual
AtomID typedef	core::scoring::constraints::Constraint
BindingSiteConstraint()	protocols::constraints_additional::BindingSiteConstraint	inline
BindingSiteConstraint(utility::vector1< AtomID > atms, core::pose::Pose const &start_pose, core::scoring::ScoreType scoretype=core::scoring::atom_pair_constraint)	protocols::constraints_additional::BindingSiteConstraint
BindingSiteConstraint(utility::vector1< AtomID > atms, ObjexxFCL::FArray2D< core::Real > tgt_pos, ObjexxFCL::FArray2D< core::Real > tgt_pos_centroid, core::scoring::ScoreType scoretype=core::scoring::atom_pair_constraint)	protocols::constraints_additional::BindingSiteConstraint
choose_effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &sp, numeric::random::RandomGenerator &)	core::scoring::constraints::Constraint	virtual
clone() const override	protocols::constraints_additional::BindingSiteConstraint	inlinevirtual
core::scoring::constraints::Constraint::clone(func::FuncOP) const	core::scoring::constraints::Constraint	virtual
Constraint(ScoreType const &t)	core::scoring::constraints::Constraint
dist(core::scoring::func::XYZ_Func const &) const override	protocols::constraints_additional::BindingSiteConstraint	inlinevirtual
core::scoring::constraints::Constraint::dist(core::pose::Pose const &) const	core::scoring::constraints::Constraint	virtual
effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &) const	core::scoring::constraints::Constraint	virtual
fill_f1_f2(AtomID const &atom, core::scoring::func::XYZ_Func const &xyz, core::Vector &F1, core::Vector &F2, core::scoring::EnergyMap const &weights) const override	protocols::constraints_additional::BindingSiteConstraint
core::scoring::constraints::Constraint::fill_f1_f2(AtomID const &atom, core::scoring::func::XYZ_Func const &xyz_func, Vector &F1, Vector &F2, EnergyMap const &weights) const =0	core::scoring::constraints::Constraint	pure virtual
get_func() const	core::scoring::constraints::Constraint	virtual
init(core::pose::Pose const &start_pose)	protocols::constraints_additional::BindingSiteConstraint	protected
natoms() const override	protocols::constraints_additional::BindingSiteConstraint	virtual
operator!=(Constraint const &other) const	core::scoring::constraints::Constraint
operator==(core::scoring::constraints::Constraint const &other) const override	protocols::constraints_additional::BindingSiteConstraint	virtual
pre_align(utility::vector1< numeric::xyzVector< core::Real > > const &templ_atms, utility::vector1< bool > const &) const	protocols::constraints_additional::BindingSiteConstraint
read_constraint(std::istream &, core::pose::Pose const &)	core::scoring::constraints::Constraint	virtual
read_data(std::istream &)	core::scoring::constraints::Constraint	virtual
read_def(std::istream &in, core::pose::Pose const &pose, core::scoring::func::FuncFactory const &func_factory) override	protocols::constraints_additional::BindingSiteConstraint	virtual
remap_resid(core::id::SequenceMapping const &seqmap) const override	protocols::constraints_additional::BindingSiteConstraint	virtual
remapped_clone(pose::Pose const &, pose::Pose const &, id::SequenceMappingCOP map) const	core::scoring::constraints::Constraint	virtual
residues() const	core::scoring::constraints::Constraint	virtual
rot_db	protocols::constraints_additional::BindingSiteConstraint	privatestatic
same_type_as_me(core::scoring::constraints::Constraint const &other) const override	protocols::constraints_additional::BindingSiteConstraint	virtual
score(core::scoring::func::XYZ_Func const &xyz, core::scoring::EnergyMap const &, core::scoring::EnergyMap &emap) const override	protocols::constraints_additional::BindingSiteConstraint	virtual
core::scoring::constraints::Constraint::score(pose::Pose const &pose) const	core::scoring::constraints::Constraint	virtual
core::scoring::constraints::Constraint::score(pose::Pose const &pose, EnergyMap const &weights) const	core::scoring::constraints::Constraint	virtual
score_type() const	core::scoring::constraints::Constraint	inline
setup_for_derivatives(core::scoring::func::XYZ_Func const &xyz, core::scoring::ScoreFunction const &scfxn) const override	protocols::constraints_additional::BindingSiteConstraint	virtual
setup_for_scoring(core::scoring::func::XYZ_Func const &xyz, core::scoring::ScoreFunction const &scfxn) const override	protocols::constraints_additional::BindingSiteConstraint	virtual
show(std::ostream &out) const override	protocols::constraints_additional::BindingSiteConstraint	virtual
show_def(std::ostream &out, core::pose::Pose const &pose) const override	protocols::constraints_additional::BindingSiteConstraint	virtual
show_violations(std::ostream &out, core::pose::Pose const &pose, core::Size verbose_level, core::Real threshold=1.0) const override	protocols::constraints_additional::BindingSiteConstraint	virtual
steal_def(pose::Pose const &)	core::scoring::constraints::Constraint	virtual
tgt_pos_	protocols::constraints_additional::BindingSiteConstraint	private
tgt_pos_centroid_	protocols::constraints_additional::BindingSiteConstraint	private
to_string() const	core::scoring::constraints::Constraint
type() const override	protocols::constraints_additional::BindingSiteConstraint	virtual
~Constraint() override	core::scoring::constraints::Constraint