protocols::task_operations::ResfileCommandOperation Class Reference

Applies the equivalent of a resfile line (without the resnums) to residues specified in a residue selector. More...

#include <ResfileCommandOperation.hh>

Inheritance diagram for protocols::task_operations::ResfileCommandOperation:

Public Member Functions
	ResfileCommandOperation ()
	ResfileCommandOperation (core::select::residue_selector::ResidueSelectorCOP selector, std::string const &command)
	ResfileCommandOperation (ResfileCommandOperation const &src)
	~ResfileCommandOperation () override
core::pack::task::operation::TaskOperationOP	clone () const override
	Create another task operation of the type matching the most-derived version of the class. More...
void	parse_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Configure from a RosettaScripts XML tag. More...
void	apply (core::pose::Pose const &pose, core::pack::task::PackerTask &task) const override
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
void	set_command (std::string const &command)
	A resfile command string without any numbers in the front. eg: POLAR PIKAA X[R2]X[T6]X[OP5]. More...
void	set_residue_selector (core::select::residue_selector::ResidueSelectorCOP selector)
Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	keyname ()
	Return the name used to construct this TaskOperation from an XML file. More...
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
	Describe the format of XML file used to initialize this TaskOperation. More...

Private Attributes
std::map< std::string, core::pack::task::ResfileCommandOP >	command_map_
core::select::residue_selector::ResidueSelectorCOP	selector_ = nullptr
std::string	command_ = ""
utility::vector1 < core::pack::task::ResfileCommandOP >	commands_

Additional Inherited Members
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Detailed Description

Applies the equivalent of a resfile line (without the resnums) to residues specified in a residue selector.

Constructor & Destructor Documentation

protocols::task_operations::ResfileCommandOperation::ResfileCommandOperation

(

)

References command_map_, and core::pack::task::create_command_map().

protocols::task_operations::ResfileCommandOperation::ResfileCommandOperation	(	core::select::residue_selector::ResidueSelectorCOP	selector,
		std::string const &	command
	)

References command_map_, core::pack::task::create_command_map(), set_command(), and set_residue_selector().

protocols::task_operations::ResfileCommandOperation::ResfileCommandOperation

(

ResfileCommandOperation const &

src

)

References command_, command_map_, core::pack::task::create_command_map(), selector_, set_command(), and set_residue_selector().

protocols::task_operations::ResfileCommandOperation::~ResfileCommandOperation ( )

override

Member Function Documentation

void protocols::task_operations::ResfileCommandOperation::apply ( core::pose::Pose const &  , core::pack::task::PackerTask &    ) const

overridevirtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::TaskOperation.

References command_, commands_, core::select::residue_selector::selection_positions(), and selector_.

TaskOperationOP protocols::task_operations::ResfileCommandOperation::clone ( ) const

overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

std::string protocols::task_operations::ResfileCommandOperation::keyname ( )

static

Return the name used to construct this TaskOperation from an XML file.

Referenced by protocols::task_operations::ResfileCommandOperationCreator::keyname(), and provide_xml_schema().

void protocols::task_operations::ResfileCommandOperation::parse_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  data  )

overridevirtual

Configure from a RosettaScripts XML tag.

Reimplemented from core::pack::task::operation::TaskOperation.

References core::select::residue_selector::parse_residue_selector(), set_command(), and set_residue_selector().

void protocols::task_operations::ResfileCommandOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

Describe the format of XML file used to initialize this TaskOperation.

References core::select::residue_selector::attributes_for_parse_residue_selector(), keyname(), and core::pack::task::operation::task_op_schema_w_attributes().

Referenced by protocols::task_operations::ResfileCommandOperationCreator::provide_xml_schema().

void protocols::task_operations::ResfileCommandOperation::set_command

(

std::string const &

command

)

A resfile command string without any numbers in the front. eg: POLAR PIKAA X[R2]X[T6]X[OP5].

References command_, command_map_, commands_, and core::pack::task::parse_res_agnostic_commands().

Referenced by parse_tag(), and ResfileCommandOperation().

void protocols::task_operations::ResfileCommandOperation::set_residue_selector

(

core::select::residue_selector::ResidueSelectorCOP

selector

)

References selector_.

Referenced by parse_tag(), and ResfileCommandOperation().

Member Data Documentation

std::string protocols::task_operations::ResfileCommandOperation::command_ = ""

private

Referenced by apply(), ResfileCommandOperation(), and set_command().

std::map< std::string, core::pack::task::ResfileCommandOP > protocols::task_operations::ResfileCommandOperation::command_map_

private

Referenced by ResfileCommandOperation(), and set_command().

utility::vector1< core::pack::task::ResfileCommandOP > protocols::task_operations::ResfileCommandOperation::commands_

private

Referenced by apply(), and set_command().

core::select::residue_selector::ResidueSelectorCOP protocols::task_operations::ResfileCommandOperation::selector_ = nullptr

private

Referenced by apply(), ResfileCommandOperation(), and set_residue_selector().

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The documentation for this class was generated from the following files:

• src/protocols/task_operations/ResfileCommandOperation.hh
• src/protocols/task_operations/ResfileCommandOperation.cc