protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter Class Reference

#include <SpecificResiduesNearInterfaceFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter:

Public Member Functions
	SpecificResiduesNearInterfaceFilter ()
	default ctor More...
	SpecificResiduesNearInterfaceFilter (SpecificResiduesNearInterfaceFilter const &src)
	~SpecificResiduesNearInterfaceFilter () override
core::pack::task::TaskFactoryOP	task_factory () const
void	task_factory (core::pack::task::TaskFactoryOP tf)
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
core::Size	compute (core::pose::Pose const &pose) const
	Constructor with a single target residue. More...
bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...
void	report (std::ostream &out, core::pose::Pose const &pose) const override
core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...
protocols::filters::FilterOP	clone () const override
protocols::filters::FilterOP	fresh_instance () const override
std::string	name () const override
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
	~Filter () override
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Types
typedef protocols::filters::Filter	parent

Private Attributes
core::pack::task::TaskFactoryOP	task_factory_
core::Size	rb_jump_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef protocols::filters::Filter protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::parent

private

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::SpecificResiduesNearInterfaceFilter

(

)

default ctor

protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::SpecificResiduesNearInterfaceFilter

(

SpecificResiduesNearInterfaceFilter const &

src

)

protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::~SpecificResiduesNearInterfaceFilter ( )

overridedefault

Member Function Documentation

bool protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute().

std::string protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::class_name ( )

static

Referenced by protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilterCreator::keyname(), name(), and provide_xml_schema().

FilterOP protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

Size protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::compute

(

core::pose::Pose const &

pose

)

const

Constructor with a single target residue.

References protocols::scoring::Interface::calculate(), core::pose::Pose::conformation(), protocols::scoring::Interface::is_interface(), core::conformation::Conformation::num_chains(), rb_jump_, core::pose::Pose::size(), and task_factory_.

Referenced by apply(), report(), and report_sm().

FilterOP protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

std::string protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::parse_my_tag ( utility::tag::TagCOP  , basic::datacache::DataMap &    )

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References core::pack::task::parse_task_operations(), rb_jump_, and task_factory().

void protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References core::pack::task::attributes_for_parse_task_operations(), class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilterCreator::provide_xml_schema().

void protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute().

Real protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::report_sm ( core::pose::Pose const &  ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

TaskFactoryOP protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::task_factory

(

)

const

References task_factory_.

Referenced by parse_my_tag().

void protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::task_factory

(

core::pack::task::TaskFactoryOP

tf

)

Member Data Documentation

core::Size protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::rb_jump_

private

Referenced by compute(), and parse_my_tag().

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::task_factory_

private

Referenced by compute(), and task_factory().

---

The documentation for this class was generated from the following files:

• src/protocols/protein_interface_design/filters/SpecificResiduesNearInterfaceFilter.hh
• src/protocols/protein_interface_design/filters/SpecificResiduesNearInterfaceFilter.cc