core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph Member List

This is the complete list of members for core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph, including all inherited members.

::BuriedUnsatPenaltyGraphSymmetricTests class	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	friend
::BuriedUnsatPenaltyGraphTests class	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	friend
::BuriedUnsatPenaltySymmetricTests class	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	friend
::BuriedUnsatPenaltyTests class	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	friend
add_edge(core::Size const seqpos1, core::Size const rotamer_index1, core::Size const seqpos2, core::Size const rotamer_index2)	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	private
add_edge(core::Size const node_index1, core::Size const node_index2, BuriedUnsatPenaltyEdge const &other_edge)	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	private
always_rotamer_one_	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	private
bunsat_edge_pool_	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	private
BuriedUnsatPenaltyGraph()=delete	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph
BuriedUnsatPenaltyGraph(BuriedUnsatPenaltyGraphOptionsCOP options, core::scoring::hbonds::HBondOptionsCOP hbond_options)	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph
BuriedUnsatPenaltyGraph(platform::Size const num_nodes, BuriedUnsatPenaltyGraphOptionsCOP options, core::scoring::hbonds::HBondOptionsCOP hbond_options)	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph
BuriedUnsatPenaltyGraph(BuriedUnsatPenaltyGraph const &src)	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph
compute_unsats_all_nodes()	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph
compute_unsats_changed_nodes(utility::vector1< core::Size > const &changed_node_indices, utility::vector1< core::Size > const &changed_node_partners)	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph
compute_unsats_for_node(core::Size const node_index)	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph
configure_hbond_options(core::scoring::hbonds::HBondOptions &hbondoptions)	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	static
copy_node_and_connected_edges(core::Size const node_index_in_this_graph, BuriedUnsatPenaltyGraph const &other_graph, core::Size const node_index_in_other_graph)	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph
create_new_edge(platform::Size index1, platform::Size index2) override	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	protected
create_new_edge(utility::graph::Edge const *example_edge) override	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	protected
create_new_node(platform::Size node_index) override	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	protected
delete_edge(utility::graph::Edge *edge) override	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph
delete_node(utility::graph::Node *node) override	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph
find_edge(core::Size const seqpos1, core::Size const rotamer_index1, core::Size const seqpos2, core::Size const rotamer_index2)	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	private
find_edge(core::Size const seqpos1, core::Size const rotamer_index1, core::Size const seqpos2, core::Size const rotamer_index2) const	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	private
get_edge_exists(core::Size const seqpos1, core::Size const rotamer_index1, core::Size const seqpos2, core::Size const rotamer_index2) const	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	private
get_node_index(core::Size const seqpos, core::Size const rotamer_index) const	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	inline
get_node_index(core::conformation::ResidueCOP residue) const	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	inline
has_node_corresponding_to_residue(core::conformation::ResidueCOP residue) const	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	inline
hbond_options_	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	private
initialize_graph_for_packing(core::pose::Pose const &pose, core::pack::rotamer_set::RotamerSets const &rotamersets, bool const only_scoring=false, bool const prevent_pruning=false)	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph
initialize_graph_for_scoring(core::pose::Pose const &pose)	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph
initialize_node(core::Size const node_index, core::Size const residue_position, core::Size const rotamer_index, core::conformation::ResidueCOP residue, core::pose::Pose const &pose, core::scoring::hbonds::HBondDatabase const &hb_data, bool const is_symmetric)	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	private
nodeindex_to_residue_memory_address(core::Size const nodeindex) const	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	inline
nodeindex_to_residue_memory_address_	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	private
options_	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	private
parent typedef	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph
provide_pymol_commands_to_show_groups(std::ostream &out, core::pose::Pose const &pose) const	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph
residue_memory_address_to_nodeindex_	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	private
residuepos_rotamerindex_to_nodeindex_	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph	private
set_always_rotamer_one(bool const setting)	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph
~BuriedUnsatPenaltyGraph() override	core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph