protocols::scoring::methods::saxs::PDDFEnergy Member List

This is the complete list of members for protocols::scoring::methods::saxs::PDDFEnergy, including all inherited members.

a_ids_	protocols::scoring::methods::saxs::PDDFEnergy	mutableprivate
atomic_interaction_cutoff() const	core::scoring::methods::WholeStructureEnergy	inlinevirtual
bin_size_	protocols::scoring::methods::saxs::PDDFEnergy	private
clone() const override	protocols::scoring::methods::saxs::PDDFEnergy	inlinevirtual
compute_chi(utility::vector1< core::Real > const &, utility::vector1< core::Real > const &) const	protocols::scoring::methods::saxs::PDDFEnergy
compute_L1(utility::vector1< core::Real > const &, utility::vector1< core::Real > const &) const	protocols::scoring::methods::saxs::PDDFEnergy
compute_pddf(const core::pose::Pose &) const	protocols::scoring::methods::saxs::PDDFEnergy
compute_pddf_without_ff(const core::pose::Pose &) const	protocols::scoring::methods::saxs::PDDFEnergy
create_energy_method(core::scoring::methods::EnergyMethodOptions const &) const	protocols::scoring::methods::saxs::PDDFEnergy	inline
create_pddf(core::pose::Pose &, core::Real, core::Real, core::Real)	protocols::scoring::methods::saxs::PDDFEnergy
d_	protocols::scoring::methods::saxs::PDDFEnergy	private
defines_high_order_terms(pose::Pose const &) const	core::scoring::methods::EnergyMethod	virtual
dmatrix_	protocols::scoring::methods::saxs::PDDFEnergy	mutableprivate
EnergyMethod(EnergyMethodCreatorOP creator)	core::scoring::methods::EnergyMethod
eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const	core::scoring::methods::EnergyMethod	virtual
evaluate_pddf_energy(const core::pose::Pose &pose) const	protocols::scoring::methods::saxs::PDDFEnergy
factors_	protocols::scoring::methods::saxs::PDDFEnergy	mutableprivate
ff_manager_	protocols::scoring::methods::saxs::PDDFEnergy	private
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const	core::scoring::methods::EnergyMethod	virtual
finalize_after_minimizing(pose::Pose &pose) const	core::scoring::methods::EnergyMethod	virtual
finalize_total_energy(core::pose::Pose &pose, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &totals) const override	protocols::scoring::methods::saxs::PDDFEnergy	virtual
get_dist_bins()	protocols::scoring::methods::saxs::PDDFEnergy	inline
get_pddf()	protocols::scoring::methods::saxs::PDDFEnergy	inline
if_fit_area_	protocols::scoring::methods::saxs::PDDFEnergy	private
if_hydrogens_	protocols::scoring::methods::saxs::PDDFEnergy	private
indicate_required_context_graphs(utility::vector1< bool > &) const override	protocols::scoring::methods::saxs::PDDFEnergy	inlinevirtual
is_glob_	protocols::scoring::methods::saxs::PDDFEnergy	mutableprivate
max_bin_	protocols::scoring::methods::saxs::PDDFEnergy	private
method_type() const override	core::scoring::methods::WholeStructureEnergy	virtual
min_bin_	protocols::scoring::methods::saxs::PDDFEnergy	private
minimize_in_whole_structure_context(pose::Pose const &) const	core::scoring::methods::EnergyMethod	virtual
norm_	protocols::scoring::methods::saxs::PDDFEnergy	private
parent typedef	core::scoring::methods::WholeStructureEnergy
PDDFEnergy()	protocols::scoring::methods::saxs::PDDFEnergy
PDDFEnergy(utility::vector1< core::Real > const &, utility::vector1< core::Real > const &)	protocols::scoring::methods::saxs::PDDFEnergy
pose_pddf_	protocols::scoring::methods::saxs::PDDFEnergy	mutableprivate
prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const	core::scoring::methods::EnergyMethod	virtual
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	core::scoring::methods::EnergyMethod	virtual
r_ids_	protocols::scoring::methods::saxs::PDDFEnergy	mutableprivate
read_pddf(std::string)	protocols::scoring::methods::saxs::PDDFEnergy	private
reference_pddf_	protocols::scoring::methods::saxs::PDDFEnergy	private
requires_a_setup_for_scoring_for_residue_opportunity_during_regular_scoring(pose::Pose const &pose) const	core::scoring::methods::EnergyMethod	virtual
score_types() const	core::scoring::methods::EnergyMethod	inline
set_score_types(EnergyMethodCreatorOP creator)	core::scoring::methods::EnergyMethod	protected
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) const	core::scoring::methods::EnergyMethod	virtual
setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_packing_with_rotsets(pose::Pose &pose, pack_basic::RotamerSetsBaseOP const &rotsets, ScoreFunction const &sfxn) const	core::scoring::methods::EnergyMethod	virtual
setup_for_scoring(pose::Pose &, ScoreFunction const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) const	core::scoring::methods::EnergyMethod	virtual
show_additional_info(std::ostream &, pose::Pose &, bool) const	core::scoring::methods::EnergyMethod	virtual
update_residue_for_packing(pose::Pose &, Size resid) const	core::scoring::methods::EnergyMethod	virtual
version() const override	protocols::scoring::methods::saxs::PDDFEnergy	privatevirtual
WholeStructureEnergy(EnergyMethodCreatorOP)	core::scoring::methods::WholeStructureEnergy
~PDDFEnergy() override	protocols::scoring::methods::saxs::PDDFEnergy	inline
~WholeStructureEnergy() override	core::scoring::methods::WholeStructureEnergy	inline