protocols::splice::DesignInterfacesOperation Class Reference

#include <DesignInterfacesOperation.hh>

Inheritance diagram for protocols::splice::DesignInterfacesOperation:

Public Types
typedef RestrictOperationsBase	parent
Public Types inherited from protocols::task_operations::RestrictOperationsBase
typedef core::pack::task::operation::TaskOperation	TaskOperation
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef TaskOperation	parent
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Public Member Functions
	DesignInterfacesOperation ()
void	design_shell (core::Real const radius)
core::Real	design_shell () const
	~DesignInterfacesOperation () override
TaskOperationOP	clone () const override
	Create another task operation of the type matching the most-derived version of the class. More...
void	apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
	restricts to repacking all residues outside of design_shell_ around each residue More...
void	parse_tag (TagCOP, DataMap &) override
	Used to parse an xml-like tag to load parameters and properties. More...
void	repack_shell (core::Real const repack_shell)
core::Real	repack_shell () const
bool	restrict_to_repacking_chain1 () const
void	restrict_to_repacking_chain1 (bool const c)
bool	restrict_to_repacking_chain2 () const
void	restrict_to_repacking_chain2 (bool const c)
Public Member Functions inherited from protocols::task_operations::RestrictOperationsBase
	RestrictOperationsBase ()
	~RestrictOperationsBase () override
Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	keyname ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
core::Real	design_shell_
core::Real	repack_shell_
bool	restrict_to_repacking_chain1_
bool	restrict_to_repacking_chain2_

Additional Inherited Members
Protected Member Functions inherited from protocols::task_operations::RestrictOperationsBase
void	run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
	this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

typedef RestrictOperationsBase protocols::splice::DesignInterfacesOperation::parent

Constructor & Destructor Documentation

protocols::splice::DesignInterfacesOperation::DesignInterfacesOperation

(

)

protocols::splice::DesignInterfacesOperation::~DesignInterfacesOperation ( )

overridedefault

Member Function Documentation

void protocols::splice::DesignInterfacesOperation::apply ( core::pose::Pose const &  pose, core::pack::task::PackerTask &  task  ) const

overridevirtual

restricts to repacking all residues outside of design_shell_ around each residue

Implements protocols::task_operations::RestrictOperationsBase.

References core::pose::append_pose_to_pose(), protocols::simple_moves::SwitchChainOrderMover::chain_order(), core::pose::Pose::conformation(), design_shell(), core::conformation::Conformation::num_chains(), core::pose::partition_pose_by_jump(), protocols::task_operations::DesignAroundOperation::repack_shell(), repack_shell(), protocols::rosetta_scripts::residue_packer_states(), restrict_to_repacking_chain1(), restrict_to_repacking_chain2(), protocols::splice::TR(), and protocols::protein_interface_design::movers::SetAtomTree::two_parts_chain1().

core::pack::task::operation::TaskOperationOP protocols::splice::DesignInterfacesOperation::clone ( ) const

overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements protocols::task_operations::RestrictOperationsBase.

void protocols::splice::DesignInterfacesOperation::design_shell

(

core::Real const

radius

)

References design_shell_, repack_shell(), and repack_shell_.

core::Real protocols::splice::DesignInterfacesOperation::design_shell ( ) const

inline

References design_shell_.

Referenced by apply(), parse_tag(), and repack_shell().

static std::string protocols::splice::DesignInterfacesOperation::keyname ( )

inlinestatic

Referenced by protocols::splice::DesignInterfacesOperationCreator::keyname(), and provide_xml_schema().

void protocols::splice::DesignInterfacesOperation::parse_tag ( TagCOP  tag, DataMap &    )

overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References design_shell(), repack_shell(), restrict_to_repacking_chain1(), restrict_to_repacking_chain2(), and protocols::splice::TR().

void protocols::splice::DesignInterfacesOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References keyname(), and core::pack::task::operation::task_op_schema_w_attributes().

Referenced by protocols::splice::DesignInterfacesOperationCreator::provide_xml_schema().

void protocols::splice::DesignInterfacesOperation::repack_shell ( core::Real const  repack_shell )

inline

References design_shell(), design_shell_, repack_shell(), and repack_shell_.

core::Real protocols::splice::DesignInterfacesOperation::repack_shell ( ) const

inline

References repack_shell_.

Referenced by apply(), design_shell(), parse_tag(), and repack_shell().

bool protocols::splice::DesignInterfacesOperation::restrict_to_repacking_chain1 ( ) const

inline

References restrict_to_repacking_chain1_.

Referenced by apply(), and parse_tag().

void protocols::splice::DesignInterfacesOperation::restrict_to_repacking_chain1 ( bool const  c )

inline

References core::pack::dunbrack::c, and restrict_to_repacking_chain1_.

bool protocols::splice::DesignInterfacesOperation::restrict_to_repacking_chain2 ( ) const

inline

References restrict_to_repacking_chain2_.

Referenced by apply(), and parse_tag().

void protocols::splice::DesignInterfacesOperation::restrict_to_repacking_chain2 ( bool const  c )

inline

References core::pack::dunbrack::c, and restrict_to_repacking_chain2_.

Member Data Documentation

core::Real protocols::splice::DesignInterfacesOperation::design_shell_

private

Referenced by design_shell(), and repack_shell().

core::Real protocols::splice::DesignInterfacesOperation::repack_shell_

private

Referenced by design_shell(), and repack_shell().

bool protocols::splice::DesignInterfacesOperation::restrict_to_repacking_chain1_

private

Referenced by restrict_to_repacking_chain1().

bool protocols::splice::DesignInterfacesOperation::restrict_to_repacking_chain2_

private

Referenced by restrict_to_repacking_chain2().

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The documentation for this class was generated from the following files:

• src/protocols/splice/DesignInterfacesOperation.hh
• src/protocols/splice/DesignInterfacesOperation.cc