| ab_info_ | protocols::antibody::AntibodyDatabaseManager | private |
| AntibodyDatabaseManager(AntibodyInfoCOP ab_info, bool force_north_paper_db=false) | protocols::antibody::AntibodyDatabaseManager | |
| AntibodyDatabaseManager(AntibodyDatabaseManager const &src) | protocols::antibody::AntibodyDatabaseManager | |
| bind_vec_constraint(utility::vector1< std::string > const &vec, cppdb::statement &select_statement, core::Size &col) const | protocols::antibody::AntibodyDatabaseManager | private |
| cdr_cache_limit_ | protocols::antibody::AntibodyDatabaseManager | private |
| check_for_graft_instruction_inconsistencies(AntibodyCDRSetOptions const &options) | protocols::antibody::AntibodyDatabaseManager | private |
| clone() const | protocols::antibody::AntibodyDatabaseManager | |
| create_database_session(std::string const database_path) | protocols::antibody::AntibodyDatabaseManager | private |
| db_path_ | protocols::antibody::AntibodyDatabaseManager | private |
| db_session_ | protocols::antibody::AntibodyDatabaseManager | private |
| get_ands(std::string name, core::Size n) const | protocols::antibody::AntibodyDatabaseManager | private |
| get_cluster_string_vec(utility::vector1< clusters::CDRClusterEnum > const &clusters) | protocols::antibody::AntibodyDatabaseManager | private |
| get_cluster_totals(bool use_outliers) const | protocols::antibody::AntibodyDatabaseManager | private |
| get_cluster_totals() const | protocols::antibody::AntibodyDatabaseManager | private |
| has_vec_inconsistency(utility::vector1< T > const &include, utility::vector1< T > const &leave_out) const | protocols::antibody::AntibodyDatabaseManager | private |
| high_mem_mode_ | protocols::antibody::AntibodyDatabaseManager | private |
| ignore_light_chain(bool const ignore_light_chain) | protocols::antibody::AntibodyDatabaseManager | inline |
| ignore_light_chain_ | protocols::antibody::AntibodyDatabaseManager | private |
| load_cdr_design_data(design::AntibodyCDRSeqDesignOptions const &options, core::pose::Pose const &pose, std::map< core::Size, AAProbabilities > &prob_set, core::Size const cutoff) | protocols::antibody::AntibodyDatabaseManager | |
| load_cdr_design_data_for_cdrs(utility::vector1< bool > const &cdrs, core::pose::Pose const &pose, std::map< core::Size, AAProbabilities > &prob_set, core::Size const cutoff) | protocols::antibody::AntibodyDatabaseManager | |
| load_cdr_pose(CDRDBPose &db_pose) | protocols::antibody::AntibodyDatabaseManager | |
| load_cdr_poses(AntibodyCDRSetOptions const &options, core::pose::Pose const &pose, core::Size overhang=3) | protocols::antibody::AntibodyDatabaseManager | |
| load_cdr_sequences(utility::vector1< bool > const &cdrs, core::pose::Pose const &pose, bool match_on_length=false) | protocols::antibody::AntibodyDatabaseManager | |
| load_cdr_sequences_for_cdr(CDRNameEnum const cdr, core::Size const length, clusters::CDRClusterEnum const cluster, bool load_on_length) | protocols::antibody::AntibodyDatabaseManager | private |
| load_cdr_sequences_for_cdr_cluster(CDRNameEnum const cdr, clusters::CDRClusterEnum const cluster) | protocols::antibody::AntibodyDatabaseManager | |
| load_cdr_sequences_for_cdr_length(CDRNameEnum const cdr, core::Size const length) | protocols::antibody::AntibodyDatabaseManager | |
| load_structure_loading_info() | protocols::antibody::AntibodyDatabaseManager | private |
| loadable_structure_tags_ | protocols::antibody::AntibodyDatabaseManager | private |
| set_outlier_use(bool use_outliers) | protocols::antibody::AntibodyDatabaseManager | |
| skip_structure_tags_ | protocols::antibody::AntibodyDatabaseManager | private |
| use_h3_graft_outliers_ | protocols::antibody::AntibodyDatabaseManager | private |
| use_only_H3_kinked_ | protocols::antibody::AntibodyDatabaseManager | private |
| use_outliers_ | protocols::antibody::AntibodyDatabaseManager | private |
| ~AntibodyDatabaseManager() override | protocols::antibody::AntibodyDatabaseManager | |
1.8.7