| DNA_DihedralPotential(std::string const &filename) | core::scoring::dna::DNA_DihedralPotential | |
| DNA_DihedralPotential() | core::scoring::dna::DNA_DihedralPotential | |
| eval_harmonic_backbone_torsion_score_and_deriv(Size const tor, conformation::Residue const &rsd, pose::Pose const &pose, Real &score, Real &dscore_dtor) const | core::scoring::dna::DNA_DihedralPotential | |
| eval_harmonic_backbone_torsion_score_and_deriv(Size const tor, conformation::Residue const &rsd, pose::Pose const &pose, Real &score, Real &dscore_dchi, Real &dscore_deps, Real &dscore_dzeta) const | core::scoring::dna::DNA_DihedralPotential | |
| eval_harmonic_sugar_pucker_dependent_chi_torsion_score_and_deriv(conformation::Residue const &rsd, pose::Pose const &pose, Size const pucker, Real &score, Real &dscore_dchi) const | core::scoring::dna::DNA_DihedralPotential | |
| eval_sugar_torsion_score_and_deriv(Real const torsion, Size const tor, conformation::Residue const &rsd, Size const pucker, Real &score, Real &dscore_dtor) const | core::scoring::dna::DNA_DihedralPotential | |
| get_mean_sugar_pucker_dependent_chi(conformation::Residue const &rsd) const | core::scoring::dna::DNA_DihedralPotential | |
| get_sugar_torsion_mean_and_sdev(Size const tor, conformation::Residue const &rsd, Size const pucker, Real &mean, Real &sdev) const | core::scoring::dna::DNA_DihedralPotential | |
| mean_backbone_torsion_ | core::scoring::dna::DNA_DihedralPotential | private |
| mean_sugar_torsion_ | core::scoring::dna::DNA_DihedralPotential | private |
| parse_dna_geometry_log(std::istream &data) | core::scoring::dna::DNA_DihedralPotential | private |
| read_dna_geometry_log_file(std::string const &filename) | core::scoring::dna::DNA_DihedralPotential | private |
| read_dna_geometry_log_file_from_database(std::string const &database_file) | core::scoring::dna::DNA_DihedralPotential | private |
| skip_torsion(conformation::Residue const &rsd, Size const tor) const | core::scoring::dna::DNA_DihedralPotential | private |