protocols::evolution::NucleotideMutation Member List

This is the complete list of members for protocols::evolution::NucleotideMutation, including all inherited members.

add_nt_seq_to_pose(core::pose::Pose &pose)	protocols::evolution::NucleotideMutation
apply(Pose &pose) override	protocols::evolution::NucleotideMutation	virtual
bbnbrs() const	protocols::evolution::NucleotideMutation	inline
bbnbrs(core::Size const n)	protocols::evolution::NucleotideMutation	inline
bbnbrs_	protocols::evolution::NucleotideMutation	private
cache_task() const	protocols::evolution::NucleotideMutation
cache_task(bool cache)	protocols::evolution::NucleotideMutation
cache_task_	protocols::evolution::NucleotideMutation	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::evolution::NucleotideMutation	virtual
compute_folding_energies(core::scoring::ScoreFunctionOP fa_scorefxn, core::pose::Pose &pose, utility::vector1< bool > const &is_flexible, utility::vector1< bool > const &is_mutpos, core::Size bbnbrs, bool flexbb)	protocols::evolution::NucleotideMutation
continue_if_silent() const	protocols::evolution::NucleotideMutation	inline
continue_if_silent(bool const c)	protocols::evolution::NucleotideMutation	inline
continue_if_silent_	protocols::evolution::NucleotideMutation	private
create()	protocols::moves::Mover	virtual
find_neighbors(utility::vector1< bool > const &is_mutated, core::pose::Pose const &pose, utility::vector1< bool > &is_flexible, core::Real const heavyatom_distance_threshold)	protocols::evolution::NucleotideMutation
flexbb() const	protocols::evolution::NucleotideMutation	inline
flexbb(bool const f)	protocols::evolution::NucleotideMutation	inline
flexbb_	protocols::evolution::NucleotideMutation	private
fresh_instance() const override	protocols::evolution::NucleotideMutation	inlinevirtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::evolution::NucleotideMutation	virtual
get_native_pose() const	protocols::moves::Mover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
init_sequence() const	protocols::evolution::NucleotideMutation	inline
init_sequence(std::string const &s)	protocols::evolution::NucleotideMutation	inline
init_sequence_	protocols::evolution::NucleotideMutation	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::evolution::NucleotideMutation	static
name()	protocols::moves::Mover	inlinestatic
NucleotideMutation()	protocols::evolution::NucleotideMutation
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &) override	protocols::evolution::NucleotideMutation	virtual
Pose typedef	protocols::evolution::NucleotideMutation
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::evolution::NucleotideMutation	static
reference_pose_	protocols::evolution::NucleotideMutation	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
scorefxn() const	protocols::evolution::NucleotideMutation
scorefxn(core::scoring::ScoreFunctionOP sfxn)	protocols::evolution::NucleotideMutation
scorefxn_	protocols::evolution::NucleotideMutation	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_type(std::string const &setting)	protocols::moves::Mover	inline
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
task_	protocols::evolution::NucleotideMutation	private
task_factory() const	protocols::evolution::NucleotideMutation
task_factory(core::pack::task::TaskFactoryOP tf)	protocols::evolution::NucleotideMutation
task_factory_	protocols::evolution::NucleotideMutation	private
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
~NucleotideMutation() override	protocols::evolution::NucleotideMutation