protocols::enzdes::LigDSasaFilter Class Reference

#include <EnzFilters.hh>

Inheritance diagram for protocols::enzdes::LigDSasaFilter:

Public Types
typedef protocols::filters::Filter	Filter
typedef protocols::filters::FilterOP	FilterOP

Public Member Functions
	LigDSasaFilter ()
	LigDSasaFilter (core::Real const lower_threshold, core::Real const upper_threshold)
bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...
void	report (std::ostream &out, core::pose::Pose const &pose) const override
core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...
core::Real	compute (core::pose::Pose const &pose) const
FilterOP	clone () const override
FilterOP	fresh_instance () const override
	~LigDSasaFilter () override
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
std::string	name () const override
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
	~Filter () override
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
core::Real	lower_threshold_
core::Real	upper_threshold_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef protocols::filters::Filter protocols::enzdes::LigDSasaFilter::Filter

typedef protocols::filters::FilterOP protocols::enzdes::LigDSasaFilter::FilterOP

Constructor & Destructor Documentation

protocols::enzdes::LigDSasaFilter::LigDSasaFilter ( )

inline

protocols::enzdes::LigDSasaFilter::LigDSasaFilter	(	core::Real const	lower_threshold,
		core::Real const	upper_threshold
	)

protocols::enzdes::LigDSasaFilter::~LigDSasaFilter ( )

overridedefault

Member Function Documentation

bool protocols::enzdes::LigDSasaFilter::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), lower_threshold_, protocols::enzdes::TR(), and upper_threshold_.

std::string protocols::enzdes::LigDSasaFilter::class_name ( )

static

Referenced by protocols::enzdes::LigDSasaFilterCreator::keyname().

FilterOP protocols::enzdes::LigDSasaFilter::clone ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

core::Real protocols::enzdes::LigDSasaFilter::compute

(

core::pose::Pose const &

pose

)

const

References core::pose::Pose::chain(), core::chemical::ResidueType::is_ligand(), core::pose::Pose::metric(), core::pose::Pose::residue_type(), core::pose::Pose::size(), and protocols::enzdes::TR().

Referenced by apply(), report(), and report_sm().

FilterOP protocols::enzdes::LigDSasaFilter::fresh_instance ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

std::string protocols::enzdes::LigDSasaFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References protocols::enzdes::DiffAtomSasaFilter::class_name().

void protocols::enzdes::LigDSasaFilter::parse_my_tag ( utility::tag::TagCOP  , basic::datacache::DataMap &    )

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References lower_threshold_, protocols::enzdes::TR(), and upper_threshold_.

void protocols::enzdes::LigDSasaFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References protocols::enzdes::DiffAtomSasaFilter::class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::enzdes::LigDSasaFilterCreator::provide_xml_schema().

void protocols::enzdes::LigDSasaFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::enzdes::LigDSasaFilter::report_sm ( core::pose::Pose const &  ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

core::Real protocols::enzdes::LigDSasaFilter::lower_threshold_

private

Referenced by apply(), and parse_my_tag().

core::Real protocols::enzdes::LigDSasaFilter::upper_threshold_

private

Referenced by apply(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/enzdes/EnzFilters.hh
• src/protocols/enzdes/EnzFilters.cc