RigidChunkCM.cc File Reference

#include <protocols/abinitio/abscript/RigidChunkCM.hh>
#include <protocols/abinitio/abscript/RigidChunkCMCreator.hh>
#include <core/environment/DofPassport.hh>
#include <core/chemical/ResidueConnection.hh>
#include <core/chemical/ChemicalManager.hh>
#include <protocols/environment/DofUnlock.hh>
#include <protocols/environment/EnvExcn.hh>
#include <protocols/environment/ProtectedConformation.hh>
#include <protocols/environment/claims/CutBiasClaim.hh>
#include <protocols/environment/claims/JumpClaim.hh>
#include <protocols/environment/claims/XYZClaim.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/AtomTree.hh>
#include <core/kinematics/FoldTree.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.tmpl.hh>
#include <protocols/loops/LoopsFileIO.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/chemical/ResidueProperties.hh>
#include <core/select/residue_selector/TrueResidueSelector.hh>
#include <core/select/residue_selector/ResidueIndexSelector.hh>
#include <core/select/residue_selector/util.hh>
#include <utility/tag/Tag.hh>
#include <utility/excn/Exceptions.hh>
#include <numeric/random/random.hh>
#include <numeric/numeric.functions.hh>
#include <numeric/xyz.functions.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/loops.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <algorithm>
#include <fstream>
#include <basic/datacache/WriteableCacheableMap.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>

Classes
class	protocols::abinitio::abscript::ResidueChunkSelection
class	protocols::abinitio::abscript::AtomPack

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::abinitio
	protocols::abinitio::abscript

Functions
static basic::Tracer	tr ("protocols.abinitio.abscript.RigidChunkCM", basic::t_info)
loops::Loops	protocols::abinitio::abscript::read_rigid_core (std::string const &file)
core::Size	protocols::abinitio::abscript::find_disulfide_partner (core::pose::Pose const &pose, core::Size const resid)
void	protocols::abinitio::abscript::fix_internal_coords_of_siblings (core::pose::Pose &pose, core::pose::Pose const &ref_pose, core::id::AtomID atom, core::id::AtomID ref_atom)
void	protocols::abinitio::abscript::fix_mainchain_connect (core::pose::Pose &pose, core::Size global_upper, core::pose::Pose const &ref_pose, core::Size local_upper)

Function Documentation

static basic::Tracer tr ( "protocols.abinitio.abscript.RigidChunkCM"  , basic::t_info    )

static

Referenced by protocols::abinitio::abscript::RigidChunkCM::configure(), protocols::abinitio::abscript::fix_internal_coords_of_siblings(), protocols::abinitio::abscript::fix_mainchain_connect(), protocols::abinitio::abscript::RigidChunkCM::initialize(), protocols::abinitio::abscript::RigidChunkCM::parse_my_tag(), protocols::abinitio::abscript::read_rigid_core(), protocols::abinitio::abscript::RigidChunkCM::select_parts(), and protocols::abinitio::abscript::RigidChunkCM::yield_claims().