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protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions Member List

This is the complete list of members for protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions, including all inherited members.

add_delete_frequency() const protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
add_proposal_density_factor() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
add_proposal_density_factor_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
allow_internal_hinge_moves() const protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
allow_internal_local_moves() const protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
allow_split_off() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
allow_split_off_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
allow_submotif_split() const protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
allow_virtual_o2prime_hydrogens() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
allow_virtual_o2prime_hydrogens_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
allow_virtual_side_chains() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
allow_virtual_side_chains_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
atr_rep_screen() const protocols::stepwise::options::StepWiseBasicOptionsinline
atr_rep_screen_for_docking() const protocols::stepwise::options::StepWiseBasicOptionsinline
boltzmann_choice_post_enumerated_minimize() const protocols::stepwise::options::StepWiseBasicOptionsinline
chainbreak_weight() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
chainbreak_weight_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
checkpoint() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
checkpoint_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
checkpointing_frequency() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
checkpointing_frequency_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
clone() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions
cluster_rmsd() const protocols::stepwise::options::StepWiseBasicOptionsinline
continue_until_none_missing() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
continue_until_none_missing_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
cycles() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
cycles_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
designing_with_noncanonicals() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
designing_with_noncanonicals_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
disallow_pack_polar_hydrogens() const protocols::stepwise::options::StepWiseBasicOptionsinline
docking_frequency() const protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
enumerate() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
enumerate_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
erraser() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
erraser_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
eval_base_pairs() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
eval_base_pairs_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
exclude_submotifs() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
exclude_submotifs_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
filter_complex_cycles() const protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
filter_native_big_bins() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
filter_native_big_bins_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
force_centroid_interaction() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
force_centroid_interaction_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
force_moving_res_for_erraser() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
force_moving_res_for_erraser_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
force_phosphate_instantiation() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
force_phosphate_instantiation_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
force_submotif_without_intervening_bulge() const protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
force_submotif_without_intervening_bulge_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
from_scratch_frequency() const protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
hydrate_magnesiums() const protocols::stepwise::options::StepWiseBasicOptionsinline
initialize_from_command_line()protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions
initialize_from_options_collection(utility::options::OptionCollection const &options)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions
initialize_variables()protocols::stepwise::options::StepWiseBasicOptionsprotected
integration_test_mode() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
integration_test_mode_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
just_min_after_mutation_frequency() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
just_min_after_mutation_frequency_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
list_options_read(utility::options::OptionKeyList &opts)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsstatic
local_redock_only() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
local_redock_only_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
lores() const protocols::stepwise::options::StepWiseBasicOptionsinline
make_movie() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
make_movie_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
mapfile_activated() const protocols::stepwise::options::StepWiseBasicOptionsinline
max_missing_weight() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
max_missing_weight_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
max_tries_multiplier_for_ccd() const protocols::stepwise::options::StepWiseBasicOptionsinline
min_tolerance() const protocols::stepwise::options::StepWiseBasicOptionsinline
min_type() const protocols::stepwise::options::StepWiseBasicOptionsinline
minimize_after_delete() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
minimize_after_delete_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
minimize_single_res_frequency() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
minimize_single_res_frequency_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
minimize_waters() const protocols::stepwise::options::StepWiseBasicOptionsinline
minimizer_mode() const protocols::stepwise::options::StepWiseBasicOptionsinline
n_cycles() const protocols::stepwise::options::StepWiseBasicOptionsinline
n_sample() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
n_sample_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
new_move_selector() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
new_move_selector_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
num_pose_minimize() const protocols::stepwise::options::StepWiseBasicOptionsinline
num_random_samples() const protocols::stepwise::options::StepWiseBasicOptionsinline
o2prime_legacy_mode() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
o2prime_legacy_mode_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
output_cluster_size() const protocols::stepwise::options::StepWiseBasicOptionsinline
output_minimized_pose_list() const protocols::stepwise::options::StepWiseBasicOptionsinline
pack_protein_side_chains() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
pack_protein_side_chains_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
parse_my_tag(utility::tag::TagCOP) overrideprotocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinlinevirtual
preminimize() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
preminimize_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
protein_prepack() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
protein_prepack_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
rebuild_bulge_mode() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
rebuild_bulge_mode_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
recover_low() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
recover_low_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
rmsd_screen() const protocols::stepwise::options::StepWiseBasicOptionsinline
sample_pH() const protocols::stepwise::options::StepWiseBasicOptionsinline
sampler_max_centroid_distance() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
sampler_max_centroid_distance_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
sampler_num_pose_kept() const protocols::stepwise::options::StepWiseBasicOptionsinline
sampler_perform_phosphate_pack() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
sampler_perform_phosphate_pack_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
sampler_silent_file() const protocols::stepwise::options::StepWiseBasicOptionsinline
save_times() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
save_times_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
set_add_delete_frequency(core::Real const &setting)protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
set_add_proposal_density_factor(core::Real const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_allow_internal_hinge_moves(bool const &setting)protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
set_allow_internal_local_moves(bool const &setting)protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
set_allow_split_off(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_allow_submotif_split(bool const &setting)protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
set_allow_virtual_o2prime_hydrogens(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_allow_virtual_side_chains(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_atr_rep_screen(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_atr_rep_screen_for_docking(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_boltzmann_choice_post_enumerated_minimize(bool const setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_chainbreak_weight(core::Real const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_checkpoint(bool const setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_checkpointing_frequency(core::Size const setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_cluster_rmsd(core::Real const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_continue_until_none_missing(bool const setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_cycles(core::Size const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_designing_with_noncanonicals(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_disallow_pack_polar_hydrogens(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_docking_frequency(core::Real const &setting)protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
set_enumerate(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_erraser(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_eval_base_pairs(bool const setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_exclude_submotifs(utility::vector1< std::string > const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_filter_complex_cycles(bool const &setting)protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
set_filter_native_big_bins(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_force_centroid_interaction(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_force_moving_res_for_erraser(bool const setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_force_phosphate_instantiation(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_force_submotif_without_intervening_bulge(bool const &setting)protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
set_from_scratch_frequency(core::Real const &setting)protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
set_hydrate_magnesiums(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_integration_test_mode(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_just_min_after_mutation_frequency(core::Real const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_local_redock_only(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_lores(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_make_movie(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_mapfile_activated(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_max_missing_weight(core::Real const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_max_tries_multiplier_for_ccd(core::Size const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_min_tolerance(core::Real const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_min_type(std::string const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_minimize_after_delete(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_minimize_single_res_frequency(core::Real const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_minimize_waters(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_minimizer_mode(modeler::MinimizerMode const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_n_cycles(core::Size const setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_n_sample(core::Size const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_new_move_selector(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_num_pose_minimize(core::Size const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_num_random_samples(core::Size const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_o2prime_legacy_mode(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_output_cluster_size(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_output_minimized_pose_list(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_pack_protein_side_chains(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_preminimize(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_protein_prepack(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_rebuild_bulge_mode(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_recover_low(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_rmsd_screen(core::Real const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_sample_pH(bool const setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_sampler_max_centroid_distance(core::Real const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_sampler_num_pose_kept(core::Size const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_sampler_perform_phosphate_pack(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_sampler_silent_file(std::string const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_save_times(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_silent_file(std::string const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_skip_bulge_frequency(core::Real const &setting)protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
set_skip_coord_constraints(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_skip_deletions(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_skip_preminimize(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_submotif_frequency(core::Real const &setting)protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
set_superimpose_over_all(bool const setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_switch_focus_frequency(core::Real const &setting)protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
set_temperature(core::Real const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_test_all_mg_hydration_frames(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_test_all_moves(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_tether_jump(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_thermal_sampler_output_min_pose(bool const setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_use_first_jump_for_submotif(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_use_packer_instead_of_rotamer_trials(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_use_phenix_geo(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_use_precomputed_library(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_vary_loop_length_frequency(core::Real const &setting)protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
set_vary_polar_hydrogen_geometry(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_vary_rna_bond_geometry(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_VDW_rep_screen_info(utility::vector1< std::string > const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_verbose_sampler(bool const &setting)protocols::stepwise::options::StepWiseBasicOptionsinline
set_verbose_scores(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_virtual_sugar_do_minimize(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_virtual_sugar_keep_base_fixed(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
set_virtualize_packable_moieties_in_screening_pose(bool const &setting)protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
setup_modeler_options() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions
show(std::ostream &) const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinlinevirtual
silent_file() const protocols::stepwise::options::StepWiseBasicOptionsinline
skip_bulge_frequency() const protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
skip_coord_constraints() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
skip_coord_constraints_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
skip_deletions() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
skip_deletions_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
skip_preminimize() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
skip_preminimize_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
StepWiseBasicOptions()protocols::stepwise::options::StepWiseBasicOptions
StepWiseMonteCarloOptions()protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions
StepWiseMoveSelectorOptions()protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions
submotif_frequency() const protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
superimpose_over_all() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
superimpose_over_all_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
switch_focus_frequency() const protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
temperature() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
temperature_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
test_all_mg_hydration_frames() const protocols::stepwise::options::StepWiseBasicOptionsinline
test_all_moves() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
test_all_moves_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
tether_jump() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
tether_jump_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
thermal_sampler_output_min_pose() const protocols::stepwise::options::StepWiseBasicOptionsinline
thermal_sampler_temperature() const protocols::stepwise::options::StepWiseBasicOptionsinline
type() const overrideprotocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinlinevirtual
use_first_jump_for_submotif() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
use_first_jump_for_submotif_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
use_packer_instead_of_rotamer_trials() const protocols::stepwise::options::StepWiseBasicOptionsinline
use_phenix_geo() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
use_phenix_geo_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
use_precomputed_library() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
use_precomputed_library_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
vary_loop_length_frequency() const protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptionsinline
vary_polar_hydrogen_geometry() const protocols::stepwise::options::StepWiseBasicOptionsinline
vary_rna_bond_geometry() const protocols::stepwise::options::StepWiseBasicOptionsinline
VDW_rep_screen_info() const protocols::stepwise::options::StepWiseBasicOptionsinline
verbose_sampler() const protocols::stepwise::options::StepWiseBasicOptionsinline
verbose_scores() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
verbose_scores_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
virtual_sugar_do_minimize() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
virtual_sugar_do_minimize_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
virtual_sugar_keep_base_fixed() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
virtual_sugar_keep_base_fixed_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
virtualize_packable_moieties_in_screening_pose() const protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsinline
virtualize_packable_moieties_in_screening_pose_protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsprivate
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