core::pack::task::TARGET Class Reference

TARGET flags the position as "targeted", and can optionally specify a "targeted" type. More...

#include <ResfileReader.hh>

Inheritance diagram for core::pack::task::TARGET:

Public Member Functions
ResfileCommandOP	clone () const override
void	initialize_from_tokens (utility::vector1< std::string > const &tokens, Size &which_token, Size resid) override
	TARGET. More...
void	residue_action (PackerTask &, Size resid) const override
	Modify the packer task with the command that was read in. More...
std::string	get_name () override
Public Member Functions inherited from core::pack::task::ResfileCommand
	~ResfileCommand () override
	Automatically generated virtual destructor for class deriving directly from VirtualBase. More...

Static Public Member Functions
static std::string	name ()

Private Attributes
std::string	argstring_

Detailed Description

TARGET flags the position as "targeted", and can optionally specify a "targeted" type.

This is a protocol-level flag to be used in non-vanilla packers–positions flagged as "targeted" may be treated in a special fashion

The optional specification of a target type is be useful for multistate considerations: multistate protocols need 1) rotamers and energies for all possible states, and 2) a target state The target type must be a member of PackerTask's allowed_types_

Author

ashworth

Member Function Documentation

ResfileCommandOP core::pack::task::TARGET::clone ( ) const

inlineoverridevirtual

Implements core::pack::task::ResfileCommand.

std::string core::pack::task::TARGET::get_name ( )

inlineoverridevirtual

Implements core::pack::task::ResfileCommand.

References name().

void core::pack::task::TARGET::initialize_from_tokens ( utility::vector1< std::string > const &  tokens, Size &  which_token, Size  resid  )

overridevirtual

TARGET.

Implements core::pack::task::ResfileCommand.

References core::pack::task::get_token(), and core::pack::task::onError().

static std::string core::pack::task::TARGET::name ( )

inlinestatic

Referenced by core::pack::task::create_command_map(), and get_name().

void core::pack::task::TARGET::residue_action ( PackerTask &  , Size  resid  ) const

overridevirtual

Modify the packer task with the command that was read in.

Implements core::pack::task::ResfileCommand.

References core::chemical::aa_from_oneletter_code(), core::pack::task::ResidueLevelTask::add_behavior(), core::pack::task::PackerTask::nonconst_residue_task(), core::chemical::num_canonical_aas, core::chemical::oneletter_code_specifies_aa(), and core::pack::task::onError().

Member Data Documentation

std::string core::pack::task::TARGET::argstring_

private

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The documentation for this class was generated from the following files:

• src/core/pack/task/ResfileReader.hh
• src/core/pack/task/ResfileReader.cc