| aa1() const | core::scoring::motif::ResPairMotif | |
| aa1_ | core::scoring::motif::ResPairMotif | private |
| aa2() const | core::scoring::motif::ResPairMotif | |
| aa2_ | core::scoring::motif::ResPairMotif | private |
| addcount() | core::scoring::motif::ResPairMotif | inline |
| bfac1() const | core::scoring::motif::ResPairMotif | |
| bfac1(Real const &bfac1) | core::scoring::motif::ResPairMotif | |
| bfac1_ | core::scoring::motif::ResPairMotif | private |
| bfac2() const | core::scoring::motif::ResPairMotif | |
| bfac2(Real const &bfac2) | core::scoring::motif::ResPairMotif | |
| bfac2_ | core::scoring::motif::ResPairMotif | private |
| chain1_ | core::scoring::motif::ResPairMotif | private |
| chain2_ | core::scoring::motif::ResPairMotif | private |
| check_lig_code(std::string const &qlig) const | core::scoring::motif::ResPairMotif | inline |
| check_pdb_code(std::string const &qpdb) const | core::scoring::motif::ResPairMotif | inline |
| chi1(Size const &ichi) const | core::scoring::motif::ResPairMotif | |
| chi11() const | core::scoring::motif::ResPairMotif | |
| chi12() const | core::scoring::motif::ResPairMotif | |
| chi13() const | core::scoring::motif::ResPairMotif | |
| chi14() const | core::scoring::motif::ResPairMotif | |
| chi1_ | core::scoring::motif::ResPairMotif | private |
| chi2(Size const &ichi) const | core::scoring::motif::ResPairMotif | |
| chi21() const | core::scoring::motif::ResPairMotif | |
| chi22() const | core::scoring::motif::ResPairMotif | |
| chi23() const | core::scoring::motif::ResPairMotif | |
| chi24() const | core::scoring::motif::ResPairMotif | |
| chi2_ | core::scoring::motif::ResPairMotif | private |
| count() const | core::scoring::motif::ResPairMotif | inline |
| count(Size const &count) | core::scoring::motif::ResPairMotif | inline |
| count_ | core::scoring::motif::ResPairMotif | private |
| dist2() const | core::scoring::motif::ResPairMotif | |
| dssp1() const | core::scoring::motif::ResPairMotif | |
| dssp2() const | core::scoring::motif::ResPairMotif | |
| dump_aligned_motif(std::ostream &out, core::pose::Pose const &pose1, Size const &ir, core::pose::Pose const &pose2, Size const &jr, Size &aotmno, int const &num=1, numeric::Xforms const &xforms=XsI) const | core::scoring::motif::ResPairMotif | |
| dump_aligned_motif(std::ostream &out, core::pose::Pose const &pose, Size const &ir, Size const &jr, Size &aotmno, int const &num=1, numeric::Xforms const &xforms=XsI) const | core::scoring::motif::ResPairMotif | |
| dump_aligned_motif(std::string const &fn, core::pose::Pose const &pose1, Size const &ir, core::pose::Pose const &pose2, Size const &jr, Size &aotmno, int const &num=1, numeric::Xforms const &xforms=XsI) const | core::scoring::motif::ResPairMotif | |
| dump_aligned_motif(std::string const &fn, core::pose::Pose const &pose, Size const &ir, Size const &jr, Size &aotmno, int const &num=1, numeric::Xforms const &xforms=XsI) const | core::scoring::motif::ResPairMotif | |
| dump_aligned_motif(std::ostream &out, core::pose::Pose const &pose1, Size const &ir, core::pose::Pose const &pose2, Size const &jr, int const &num=1, numeric::Xforms const &xforms=XsI) const | core::scoring::motif::ResPairMotif | |
| dump_aligned_motif(std::ostream &out, core::pose::Pose const &pose, Size const &ir, Size const &jr, int const &num=1, numeric::Xforms const &xforms=XsI) const | core::scoring::motif::ResPairMotif | |
| dump_aligned_motif(std::string const &fn, core::pose::Pose const &pose1, Size const &ir, core::pose::Pose const &pose2, Size const &jr, int const &num=1, numeric::Xforms const &xforms=XsI) const | core::scoring::motif::ResPairMotif | |
| dump_aligned_motif(std::string const &fn, core::pose::Pose const &pose, Size const &ir, Size const &jr, int const &num=1, numeric::Xforms const &xforms=XsI) const | core::scoring::motif::ResPairMotif | |
| dump_pdb(std::ostream &out, numeric::xyzTransform< Real > const &xform=Xform::identity(), std::string tag="1") const | core::scoring::motif::ResPairMotif | |
| dump_pdb(std::string const &fname="", std::string const &tag="1") const | core::scoring::motif::ResPairMotif | |
| fa_atr() const | core::scoring::motif::ResPairMotif | |
| fa_atr(Real const &fa_atr) | core::scoring::motif::ResPairMotif | |
| fa_atr_ | core::scoring::motif::ResPairMotif | private |
| fa_atr_bb() const | core::scoring::motif::ResPairMotif | |
| fa_atr_bb(Real const &fa_atr_bb) | core::scoring::motif::ResPairMotif | |
| fa_atr_bb_ | core::scoring::motif::ResPairMotif | private |
| fa_atr_sc_bb() const | core::scoring::motif::ResPairMotif | |
| fa_atr_sc_bb(Real const &fa_atr_sc_bb) | core::scoring::motif::ResPairMotif | |
| fa_atr_sc_bb_ | core::scoring::motif::ResPairMotif | private |
| fill_pose_with_motif(core::pose::Pose &pose, int const &ir=1, int const &jr=2) const | core::scoring::motif::ResPairMotif | |
| filter(RPM_FilterStats *stat=nullptr) const | core::scoring::motif::ResPairMotif | |
| get_pose(int const &ir=1, int const &jr=2) const | core::scoring::motif::ResPairMotif | |
| hb_bb() const | core::scoring::motif::ResPairMotif | |
| hb_bb(Real const &hb_bb) | core::scoring::motif::ResPairMotif | |
| hb_bb_ | core::scoring::motif::ResPairMotif | private |
| hb_bb_sc() const | core::scoring::motif::ResPairMotif | |
| hb_bb_sc(Real const &hb_bb_sc) | core::scoring::motif::ResPairMotif | |
| hb_bb_sc_ | core::scoring::motif::ResPairMotif | private |
| hb_sc() const | core::scoring::motif::ResPairMotif | |
| hb_sc(Real const &hb_sc) | core::scoring::motif::ResPairMotif | |
| hb_sc_ | core::scoring::motif::ResPairMotif | private |
| is_reversible() const | core::scoring::motif::ResPairMotif | inline |
| lg1x_ | core::scoring::motif::ResPairMotif | private |
| lg1y_ | core::scoring::motif::ResPairMotif | private |
| lg1z_ | core::scoring::motif::ResPairMotif | private |
| lg2x_ | core::scoring::motif::ResPairMotif | private |
| lg2y_ | core::scoring::motif::ResPairMotif | private |
| lg2z_ | core::scoring::motif::ResPairMotif | private |
| misc1_ | core::scoring::motif::ResPairMotif | private |
| nbrs1() const | core::scoring::motif::ResPairMotif | |
| nbrs1(Real const &nbrs) | core::scoring::motif::ResPairMotif | |
| nbrs1_ | core::scoring::motif::ResPairMotif | private |
| nbrs2() const | core::scoring::motif::ResPairMotif | |
| nbrs2(Real const &nbrs) | core::scoring::motif::ResPairMotif | |
| nbrs2_ | core::scoring::motif::ResPairMotif | private |
| operator<(ResPairMotif const &other) const | core::scoring::motif::ResPairMotif | |
| operator<<(std::ostream &out, ResPairMotif const &x) | core::scoring::motif::ResPairMotif | friend |
| operator==(ResPairMotif const &other) const | core::scoring::motif::ResPairMotif | |
| pdb() const | core::scoring::motif::ResPairMotif | inline |
| pdb_ | core::scoring::motif::ResPairMotif | private |
| print_header(std::ostream &out) | core::scoring::motif::ResPairMotif | static |
| reset() | core::scoring::motif::ResPairMotif | |
| resi1() const | core::scoring::motif::ResPairMotif | inline |
| resi1_ | core::scoring::motif::ResPairMotif | private |
| resi2() const | core::scoring::motif::ResPairMotif | inline |
| resi2_ | core::scoring::motif::ResPairMotif | private |
| ResPairMotif() | core::scoring::motif::ResPairMotif | |
| ResPairMotif(std::string const &tag, core::pose::Pose const &pose, Real6 const &rt6, Size const &resi1, Size const &resi2, Real const &nbrs1, Real const &nbrs2, Real const &fa_atr, Real const &fa_atr_sc_bb, Real const &fa_atr_bb, Real const &hb_sc, Real const &hb_bb_sc, Real const &hb_bb, Real const &bfac1, Real const &bfac2, bool is_sspaired, RPM_Type _type) | core::scoring::motif::ResPairMotif | |
| reverse_in_place() | core::scoring::motif::ResPairMotif | |
| reverse_in_place_unsafe() | core::scoring::motif::ResPairMotif | |
| reversed() const | core::scoring::motif::ResPairMotif | |
| rt() const | core::scoring::motif::ResPairMotif | |
| rt(Real6 const &rt) | core::scoring::motif::ResPairMotif | |
| rt6_ | core::scoring::motif::ResPairMotif | private |
| score() const | core::scoring::motif::ResPairMotif | |
| ss1() const | core::scoring::motif::ResPairMotif | |
| ss1_ | core::scoring::motif::ResPairMotif | private |
| ss2() const | core::scoring::motif::ResPairMotif | |
| ss2_ | core::scoring::motif::ResPairMotif | private |
| tag() const | core::scoring::motif::ResPairMotif | |
| type() const | core::scoring::motif::ResPairMotif | |
| type(RPM_Type const &type) | core::scoring::motif::ResPairMotif | inline |
| type1() const | core::scoring::motif::ResPairMotif | |
| type2() const | core::scoring::motif::ResPairMotif | |
| type_ | core::scoring::motif::ResPairMotif | private |
| valid() const | core::scoring::motif::ResPairMotif | |
| xform() const | core::scoring::motif::ResPairMotif | |
| xform(Xform const &_xform) | core::scoring::motif::ResPairMotif | |
1.8.7