| all_energies() const | protocols::toolbox::DecoySetEvaluation | inline |
| all_energies_ | protocols::toolbox::DecoySetEvaluation | private |
| center_all(ObjexxFCL::FArray1_double const &weights) | protocols::toolbox::DecoySetEvaluation | |
| center_structure(core::Size i) | protocols::toolbox::DecoySetEvaluation | |
| center_structure(core::Size i, ObjexxFCL::FArray1_double const &weights) | protocols::toolbox::DecoySetEvaluation | |
| clear() | protocols::toolbox::DecoySetEvaluation | inline |
| COM | protocols::toolbox::DecoySetEvaluation | private |
| compute_average_structure(ObjexxFCL::FArray2_double &average_structure) const | protocols::toolbox::DecoySetEvaluation | |
| compute_distance_matrix(ObjexxFCL::FArray2D_double &) const | protocols::toolbox::DecoySetEvaluation | |
| coords() const | protocols::toolbox::DecoySetEvaluation | inline |
| coords(core::Size i) const | protocols::toolbox::DecoySetEvaluation | inline |
| coords_ | protocols::toolbox::DecoySetEvaluation | private |
| create_dist_constraints(core::scoring::constraints::ConstraintSet &cst_set) const | protocols::toolbox::DecoySetEvaluation | |
| create_dist_constraints_median(core::scoring::constraints::ConstraintSet &cst_set) const | protocols::toolbox::DecoySetEvaluation | |
| create_xyz_constraints_median(core::scoring::constraints::ConstraintSet &cst_set, core::pose::Pose const &ref_pose, core::Size root) const | protocols::toolbox::DecoySetEvaluation | |
| DecoySetEvaluation() | protocols::toolbox::DecoySetEvaluation | |
| find_closest_to_average(ObjexxFCL::FArray2_double &average_structure) const | protocols::toolbox::DecoySetEvaluation | |
| n_atoms() const | protocols::toolbox::DecoySetEvaluation | inline |
| n_atoms_ | protocols::toolbox::DecoySetEvaluation | private |
| n_decoys() const | protocols::toolbox::DecoySetEvaluation | inline |
| n_decoys_ | protocols::toolbox::DecoySetEvaluation | private |
| n_decoys_max() const | protocols::toolbox::DecoySetEvaluation | inline |
| n_decoys_max_ | protocols::toolbox::DecoySetEvaluation | private |
| options_registered_ | protocols::toolbox::DecoySetEvaluation | privatestatic |
| pop_back_CA_xyz() | protocols::toolbox::DecoySetEvaluation | |
| prepare_push_back(core::Size nres) | protocols::toolbox::DecoySetEvaluation | private |
| push_back(core::pose::Pose &pose) | protocols::toolbox::DecoySetEvaluation | |
| push_back_CA_xyz(ObjexxFCL::FArray2_double const &, core::Size nres) | protocols::toolbox::DecoySetEvaluation | |
| push_back_CA_xyz_from_silent_file(core::io::silent::SilentFileData const &sfd, bool store_energies) | protocols::toolbox::DecoySetEvaluation | |
| push_back_CA_xyz_from_silent_file(core::Size n_decoys, SilentStructIterator begin, SilentStructIterator end, bool store_energies) | protocols::toolbox::DecoySetEvaluation | |
| ref_pose() | protocols::toolbox::DecoySetEvaluation | inline |
| ref_pose_ | protocols::toolbox::DecoySetEvaluation | private |
| ref_structure_ | protocols::toolbox::DecoySetEvaluation | private |
| register_options() | protocols::toolbox::DecoySetEvaluation | static |
| reserve(core::Size n_decoys_) | protocols::toolbox::DecoySetEvaluation | |
| rmsd(ObjexxFCL::FArray1_double const &weights, ObjexxFCL::FArray2_double &xx_ref, ObjexxFCL::FArray2_double &xx) const | protocols::toolbox::DecoySetEvaluation | |
| rmsf(utility::vector1< core::Real > &results) | protocols::toolbox::DecoySetEvaluation | |
| rmsf(ObjexxFCL::FArray1_double &result) | protocols::toolbox::DecoySetEvaluation | |
| rmsf(core::Size pos) | protocols::toolbox::DecoySetEvaluation | private |
| set_all_energies(utility::vector1< core::Real > const &all_energies) | protocols::toolbox::DecoySetEvaluation | inline |
| set_n_atom(core::Size natoms) | protocols::toolbox::DecoySetEvaluation | |
| set_weights(ObjexxFCL::FArray1_double const &weights) | protocols::toolbox::DecoySetEvaluation | |
| store_energies_ | protocols::toolbox::DecoySetEvaluation | private |
| superimpose(core::Size icenter=1) | protocols::toolbox::DecoySetEvaluation | |
| superimpose(ObjexxFCL::FArray1_double const &weights, core::Size icenter=1) | protocols::toolbox::DecoySetEvaluation | private |
| weights_ | protocols::toolbox::DecoySetEvaluation | private |
| wRMSD(core::Real sigma2, core::Real tolerance, ObjexxFCL::FArray1_double &weights) | protocols::toolbox::DecoySetEvaluation | |
| ~DecoySetEvaluation() override | protocols::toolbox::DecoySetEvaluation | |
1.8.7