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core::pack::task::ResidueLevelTask Member List

This is the complete list of members for core::pack::task::ResidueLevelTask, including all inherited members.

add_behavior(std::string const &behavior)=0core::pack::task::ResidueLevelTaskpure virtual
adducts() const =0core::pack::task::ResidueLevelTaskpure virtual
allowed_residue_types() const =0core::pack::task::ResidueLevelTaskpure virtual
allowed_residue_types_begin() const =0core::pack::task::ResidueLevelTaskpure virtual
allowed_residue_types_end() const =0core::pack::task::ResidueLevelTaskpure virtual
and_extrachi_cutoff(Size num_neighbors_to_be_called_buried)=0core::pack::task::ResidueLevelTaskpure virtual
append_rotamer_operation(rotamer_set::RotamerOperationOP rotop)=0core::pack::task::ResidueLevelTaskpure virtual
append_rotamerset_operation(rotamer_set::RotamerSetOperationOP rotsetop)=0core::pack::task::ResidueLevelTaskpure virtual
being_designed() const =0core::pack::task::ResidueLevelTaskpure virtual
being_packed() const =0core::pack::task::ResidueLevelTaskpure virtual
command_string() const =0core::pack::task::ResidueLevelTaskpure virtual
disable_restypes(utility::vector1< std::string > const &basenames_to_disable)=0core::pack::task::ResidueLevelTaskpure virtual
disable_restypes_with_at_least_one_property(utility::vector1< core::chemical::ResidueProperty > const &properties)=0core::pack::task::ResidueLevelTaskpure virtual
ex1() const =0core::pack::task::ResidueLevelTaskpure virtual
ex1_sample_level() const =0core::pack::task::ResidueLevelTaskpure virtual
ex1aro() const =0core::pack::task::ResidueLevelTaskpure virtual
ex1aro_exposed() const =0core::pack::task::ResidueLevelTaskpure virtual
ex1aro_exposed_sample_level() const =0core::pack::task::ResidueLevelTaskpure virtual
ex1aro_sample_level() const =0core::pack::task::ResidueLevelTaskpure virtual
ex2() const =0core::pack::task::ResidueLevelTaskpure virtual
ex2_sample_level() const =0core::pack::task::ResidueLevelTaskpure virtual
ex2aro() const =0core::pack::task::ResidueLevelTaskpure virtual
ex2aro_exposed() const =0core::pack::task::ResidueLevelTaskpure virtual
ex2aro_exposed_sample_level() const =0core::pack::task::ResidueLevelTaskpure virtual
ex2aro_sample_level() const =0core::pack::task::ResidueLevelTaskpure virtual
ex3() const =0core::pack::task::ResidueLevelTaskpure virtual
ex3_sample_level() const =0core::pack::task::ResidueLevelTaskpure virtual
ex4() const =0core::pack::task::ResidueLevelTaskpure virtual
ex4_sample_level() const =0core::pack::task::ResidueLevelTaskpure virtual
exdna_sample_level() const =0core::pack::task::ResidueLevelTaskpure virtual
extrachi_cutoff() const =0core::pack::task::ResidueLevelTaskpure virtual
extrachi_sample_level(bool buried, int chi, chemical::ResidueType const &concrete_residue) const =0core::pack::task::ResidueLevelTaskpure virtual
fix_his_tautomer() const =0core::pack::task::ResidueLevelTaskpure virtual
flip_HNQ() const =0core::pack::task::ResidueLevelTaskpure virtual
get_original_residue() const =0core::pack::task::ResidueLevelTaskpure virtual
get_original_residue_set() const =0core::pack::task::ResidueLevelTaskpure virtual
has_behavior(std::string const &behavior) const =0core::pack::task::ResidueLevelTaskpure virtual
has_behavior() const =0core::pack::task::ResidueLevelTaskpure virtual
include_current() const =0core::pack::task::ResidueLevelTaskpure virtual
include_virtual_side_chain() const =0core::pack::task::ResidueLevelTaskpure virtual
initialize_extra_rotamer_flags_from_command_line()=0core::pack::task::ResidueLevelTaskpure virtual
initialize_extra_rotamer_flags_from_options(utility::options::OptionCollection const &options)=0core::pack::task::ResidueLevelTaskpure virtual
initialize_from_command_line()=0core::pack::task::ResidueLevelTaskpure virtual
initialize_from_options(utility::options::OptionCollection const &options)=0core::pack::task::ResidueLevelTaskpure virtual
is_original_type(chemical::ResidueTypeCOP type) const =0core::pack::task::ResidueLevelTaskpure virtual
list_options_read(utility::options::OptionKeyList &read_options)core::pack::task::ResidueLevelTaskstatic
nonconst_rna_task()=0core::pack::task::ResidueLevelTaskpure virtual
operate_on_ex1() const =0core::pack::task::ResidueLevelTaskpure virtual
operate_on_ex2() const =0core::pack::task::ResidueLevelTaskpure virtual
operate_on_ex3() const =0core::pack::task::ResidueLevelTaskpure virtual
operate_on_ex4() const =0core::pack::task::ResidueLevelTaskpure virtual
optimize_h() const =0core::pack::task::ResidueLevelTaskpure virtual
or_adducts(bool setting)=0core::pack::task::ResidueLevelTaskpure virtual
or_ex1(bool ex1)=0core::pack::task::ResidueLevelTaskpure virtual
or_ex1_sample_level(ExtraRotSample ex1_sample_level)=0core::pack::task::ResidueLevelTaskpure virtual
or_ex1aro(bool ex1aro)=0core::pack::task::ResidueLevelTaskpure virtual
or_ex1aro_exposed(bool ex1aro_exposed)=0core::pack::task::ResidueLevelTaskpure virtual
or_ex1aro_exposed_sample_level(ExtraRotSample ex1aro_exposed_sample_level)=0core::pack::task::ResidueLevelTaskpure virtual
or_ex1aro_sample_level(ExtraRotSample ex1aro_sample_level)=0core::pack::task::ResidueLevelTaskpure virtual
or_ex2(bool ex2)=0core::pack::task::ResidueLevelTaskpure virtual
or_ex2_sample_level(ExtraRotSample ex2_sample_level)=0core::pack::task::ResidueLevelTaskpure virtual
or_ex2aro(bool ex2aro)=0core::pack::task::ResidueLevelTaskpure virtual
or_ex2aro_exposed(bool ex2aro_exposed)=0core::pack::task::ResidueLevelTaskpure virtual
or_ex2aro_exposed_sample_level(ExtraRotSample ex2aro_exposed_sample_level)=0core::pack::task::ResidueLevelTaskpure virtual
or_ex2aro_sample_level(ExtraRotSample ex2aro_only_sample_level)=0core::pack::task::ResidueLevelTaskpure virtual
or_ex3(bool ex3)=0core::pack::task::ResidueLevelTaskpure virtual
or_ex3_sample_level(ExtraRotSample ex3_sample_level)=0core::pack::task::ResidueLevelTaskpure virtual
or_ex4(bool ex4)=0core::pack::task::ResidueLevelTaskpure virtual
or_ex4_sample_level(ExtraRotSample ex4_sample_level)=0core::pack::task::ResidueLevelTaskpure virtual
or_exdna_sample_level(ExtraRotSample exdna_sample_level)=0core::pack::task::ResidueLevelTaskpure virtual
or_fix_his_tautomer(bool setting)=0core::pack::task::ResidueLevelTaskpure virtual
or_flip_HNQ(bool setting)=0core::pack::task::ResidueLevelTaskpure virtual
or_include_current(bool include_current)=0core::pack::task::ResidueLevelTaskpure virtual
or_include_virtual_side_chain(bool include_virtual_side_chain)=0core::pack::task::ResidueLevelTaskpure virtual
or_operate_on_ex1(bool operate)=0core::pack::task::ResidueLevelTaskpure virtual
or_operate_on_ex2(bool operate)=0core::pack::task::ResidueLevelTaskpure virtual
or_operate_on_ex3(bool operate)=0core::pack::task::ResidueLevelTaskpure virtual
or_operate_on_ex4(bool operate)=0core::pack::task::ResidueLevelTaskpure virtual
or_optimize_h(bool setting)=0core::pack::task::ResidueLevelTaskpure virtual
or_preserve_c_beta(bool setting)=0core::pack::task::ResidueLevelTaskpure virtual
preserve_c_beta() const =0core::pack::task::ResidueLevelTaskpure virtual
prevent_repacking()=0core::pack::task::ResidueLevelTaskpure virtual
print_allowed_types(std::ostream &os) const =0core::pack::task::ResidueLevelTaskpure virtual
ResidueTypeCOPList typedefcore::pack::task::ResidueLevelTask
ResidueTypeCOPListConstIter typedefcore::pack::task::ResidueLevelTask
ResidueTypeCOPListIter typedefcore::pack::task::ResidueLevelTask
restrict_absent_canonical_aas(utility::vector1< bool > const &)=0core::pack::task::ResidueLevelTaskpure virtual
restrict_absent_canonical_aas(utility::vector1< bool > const &allowed_aas, std::string const &mode)=0core::pack::task::ResidueLevelTaskpure virtual
restrict_absent_nas(utility::vector1< chemical::AA > const &keep_nas)=0core::pack::task::ResidueLevelTaskpure virtual
restrict_nonnative_canonical_aas(utility::vector1< bool > const &allowed_aas)=0core::pack::task::ResidueLevelTaskpure virtual
restrict_restypes(utility::vector1< std::string > const &basenames_to_keep)=0core::pack::task::ResidueLevelTaskpure virtual
restrict_to_repacking()=0core::pack::task::ResidueLevelTaskpure virtual
restrict_to_restypes_with_all_properties(utility::vector1< core::chemical::ResidueProperty > const &properties)=0core::pack::task::ResidueLevelTaskpure virtual
restrict_to_restypes_with_at_least_one_property(utility::vector1< core::chemical::ResidueProperty > const &properties)=0core::pack::task::ResidueLevelTaskpure virtual
rna_task() const =0core::pack::task::ResidueLevelTaskpure virtual
rotamer_operations() const =0core::pack::task::ResidueLevelTaskpure virtual
rotamer_set_operation_begin() const =0core::pack::task::ResidueLevelTaskpure virtual
rotamer_set_operation_end() const =0core::pack::task::ResidueLevelTaskpure virtual
sample_proton_chi(bool setting)=0core::pack::task::ResidueLevelTaskpure virtual
sample_proton_chi() const =0core::pack::task::ResidueLevelTaskpure virtual
target_type(chemical::ResidueTypeCOP type)=0core::pack::task::ResidueLevelTaskpure virtual
target_type(chemical::AA aa)=0core::pack::task::ResidueLevelTaskpure virtual
target_type(std::string name)=0core::pack::task::ResidueLevelTaskpure virtual
target_type() const =0core::pack::task::ResidueLevelTaskpure virtual
~ResidueLevelTask()core::pack::task::ResidueLevelTaskvirtual
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