| add_external_loop_rotamer(StepWiseSamplerSizedOP const &rotamer) | protocols::stepwise::sampler::StepWiseSamplerSizedAny | inlinevirtual |
| apply(core::pose::Pose &pose) override | protocols::stepwise::sampler::StepWiseSamplerSizedAny | virtual |
| apply(core::pose::Pose &pose, core::Size const i) override | protocols::stepwise::sampler::StepWiseSamplerSizedAny | virtual |
| base_state_lower_ | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | private |
| base_state_upper_ | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | private |
| bin_size_ | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clear_rotamer() | protocols::stepwise::sampler::StepWiseSamplerSizedAny | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| create() | protocols::moves::Mover | virtual |
| extra_beta_ | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | private |
| extra_chi_ | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | private |
| extra_epsilon_ | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | private |
| fast_ | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | private |
| fast_forward() | protocols::stepwise::sampler::StepWiseSamplerSized | inlinevirtual |
| fast_sample_torsions_from_info(utility::vector1< core::chemical::rna::GaussianParameter > const ¶ms) | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| id() const | protocols::stepwise::sampler::StepWiseSamplerSized | inline |
| id_ | protocols::stepwise::sampler::StepWiseSamplerSized | protected |
| idealize_coord_ | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init() override | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | virtual |
| init_fast() | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | |
| init_standard() | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | |
| is_init() const | protocols::toolbox::SamplerPlusPlus | inlineprotected |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| not_end() const override | protocols::stepwise::sampler::StepWiseSamplerSized | virtual |
| operator++() override | protocols::stepwise::sampler::StepWiseSamplerSizedAny | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| pucker_states_lower_ | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | private |
| pucker_states_upper_ | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | private |
| random() const | protocols::stepwise::sampler::StepWiseSampler | inlinevirtual |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset() override | protocols::stepwise::sampler::StepWiseSamplerSizedAny | virtual |
| reset_status() | protocols::moves::Mover | |
| RNA_SuiteStepWiseSampler(core::Size const rsd_id, core::chemical::rna::PuckerState const pucker_state_lower, core::chemical::rna::PuckerState const pucker_state_upper, core::chemical::rna::ChiState const base_state_lower, core::chemical::rna::ChiState const base_state_upper, bool tna_lower=false, bool tna_upper=false) | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | |
| rsd_id_ | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | private |
| sample_all_chi_ | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | private |
| sample_nucleoside_lower_ | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | private |
| sample_nucleoside_upper_ | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | private |
| SamplerPlusPlus() | protocols::toolbox::SamplerPlusPlus | inline |
| set_and_reinit(T ¶ms, T const &setting) | protocols::toolbox::SamplerPlusPlus | inlineprotected |
| set_bin_size(core::Real const setting) | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | inline |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_extra_beta(bool const setting) | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | inline |
| set_extra_chi(bool const setting) | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | inline |
| set_extra_epsilon(bool const setting) | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | inline |
| set_fast(bool const setting) | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | inline |
| set_id(core::Size const setting) | protocols::stepwise::sampler::StepWiseSamplerSized | inlinevirtual |
| set_idealize_coord(bool const setting) | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | inline |
| set_init(bool const setting) | protocols::toolbox::SamplerPlusPlus | inlineprotected |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_random(bool const setting) | protocols::stepwise::sampler::StepWiseSampler | inlinevirtual |
| set_sample_all_chi(bool const setting) | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | inline |
| set_sample_nucleoside_lower(bool const setting) | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | inline |
| set_sample_nucleoside_upper(bool const setting) | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | inline |
| set_skip_same_pucker(bool const setting) | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | inline |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &out, core::Size const indent=0) const override | protocols::stepwise::sampler::StepWiseSamplerSizedAny | virtual |
| protocols::moves::Mover::show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| size() const override | protocols::stepwise::sampler::StepWiseSamplerSizedAny | inlinevirtual |
| skip_same_pucker_ | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | private |
| StepWiseSampler() | protocols::stepwise::sampler::StepWiseSampler | inline |
| StepWiseSamplerSized() | protocols::stepwise::sampler::StepWiseSamplerSized | |
| StepWiseSamplerSizedAny() | protocols::stepwise::sampler::StepWiseSamplerSizedAny | |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| tna_lower_ | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | private |
| tna_upper_ | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | private |
| TorsionList typedef | protocols::toolbox::SamplerPlusPlus | |
| type() const override | protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler | inlinevirtual |
| protocols::moves::Mover::type(const std::string &type_in) | protocols::moves::Mover | inline |
| ~SamplerPlusPlus() override | protocols::toolbox::SamplerPlusPlus | inline |
| ~StepWiseSampler() override | protocols::stepwise::sampler::StepWiseSampler | inline |
| ~StepWiseSamplerSized() override | protocols::stepwise::sampler::StepWiseSamplerSized | |
| ~StepWiseSamplerSizedAny() override | protocols::stepwise::sampler::StepWiseSamplerSizedAny | |
1.8.7