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protocols::rosetta_scripts::RosettaScriptsJobQueen Member List

This is the complete list of members for protocols::rosetta_scripts::RosettaScriptsJobQueen, including all inherited members.

add_option(utility::options::OptionKey const &key)protocols::jd3::standard::StandardJobQueenprotected
add_options(utility::options::OptionKeyList const &opts)protocols::jd3::standard::StandardJobQueenprotected
allow_pose_inputter(pose_inputters::PoseInputterCreatorOP creator)protocols::jd3::standard::StandardJobQueenprotected
allow_pose_outputter(pose_outputters::PoseOutputterCreatorOP creator)protocols::jd3::standard::StandardJobQueenprotected
append_common_tag_subelements(utility::tag::XMLSchemaDefinition &xsd, utility::tag::XMLSchemaComplexTypeGenerator &ct_gen) const protocols::jd3::standard::StandardJobQueenprotectedvirtual
append_job_tag_subelements(utility::tag::XMLSchemaDefinition &job_definition_xsd, utility::tag::XMLSchemaComplexTypeGenerator &ct_gen) const protocols::jd3::standard::StandardJobQueenprotectedvirtual
assign_output_index(protocols::jd3::LarvalJobCOP larval_job, ResultIndex result_index_for_job, core::Size n_results_for_job, JobOutputIndex &output_index)protocols::jd3::standard::StandardJobQueenprotectedvirtual
build_output_index(protocols::jd3::LarvalJobCOP larval_job, ResultIndex result_index_for_job, core::Size n_results_for_job)protocols::jd3::standard::StandardJobQueenprotected
common_block_tags() const protocols::jd3::standard::StandardJobQueenprotected
complete_larval_job_maturation(jd3::LarvalJobCOP larval_job, utility::options::OptionCollectionCOP job_options, utility::vector1< jd3::JobResultCOP > const &) overrideprotocols::rosetta_scripts::RosettaScriptsJobQueenvirtual
completed_job_summary(LarvalJobCOP job, ResultIndex result_index, JobSummaryOP summary) overrideprotocols::jd3::standard::StandardJobQueenvirtual
create_and_init_inner_larval_job_from_preliminary(core::Size nstruct, PrelimJobNodeID prelim_job_node, JobDAGNodeID job_node) const protocols::jd3::standard::StandardJobQueenprotected
create_and_set_initial_job_dag()protocols::jd3::JobQueen
create_and_store_output_specification_for_job_result(LarvalJobCOP job, ResultIndex result_index, core::Size nresults)protocols::jd3::standard::StandardJobQueenprotected
create_and_store_output_specification_for_job_result(LarvalJobCOP job, utility::options::OptionCollection const &job_options, ResultIndex result_index, core::Size nresults)protocols::jd3::standard::StandardJobQueenprotected
create_initial_job_dag() overrideprotocols::rosetta_scripts::RosettaScriptsJobQueenprivatevirtual
create_inner_larval_job(core::Size nstruct, JobDAGNodeID job_node, PrelimJobNodeID preliminary_job_node) const protocols::jd3::standard::StandardJobQueenprotectedvirtual
create_larval_job(InnerLarvalJobOP job, NStructIndex nstruct_index, core::Size larval_job_index)protocols::jd3::standard::StandardJobQueenprotectedvirtual
create_output_specification_for_job_result(LarvalJobCOP job, utility::options::OptionCollection const &job_options, ResultIndex result_index, core::Size nresults)protocols::jd3::standard::StandardJobQueenprotectedvirtual
current_job_index() const protocols::jd3::standard::StandardJobQueenprotected
deallocation_messages() overrideprotocols::rosetta_scripts::RosettaScriptsJobQueenvirtual
deallocation_messages_to_send_protocols::rosetta_scripts::RosettaScriptsJobQueenprivate
derived_process_deallocation_message(jd3::deallocation::DeallocationMessageOP message) overrideprotocols::rosetta_scripts::RosettaScriptsJobQueenvirtual
determine_job_list(JobDAGNodeID job_dag_node_index, core::Size max_njobs) overrideprotocols::jd3::standard::StandardJobQueenvirtual
determine_job_list_and_track(JobDAGNodeID job_dag_node_index, core::Size max_njobs)protocols::jd3::JobQueen
determine_preliminary_job_list()protocols::jd3::standard::StandardJobQueenprotectedvirtual
determine_preliminary_job_list_from_xml_file(std::string const &job_def_string)protocols::jd3::standard::StandardJobQueen
do_not_accept_all_pose_inputters_from_factory()protocols::jd3::standard::StandardJobQueenprotected
do_not_accept_all_pose_outputters_from_factory()protocols::jd3::standard::StandardJobQueenprotected
expand_job_list(InnerLarvalJobOP inner_job, core::Size max_larval_jobs_to_create)protocols::jd3::standard::StandardJobQueenprotectedvirtual
flush() overrideprotocols::jd3::standard::StandardJobQueenvirtual
get_job_graph() const protocols::jd3::JobQueenprotected
get_job_tracker()protocols::jd3::JobQueenprotected
get_job_tracker() const protocols::jd3::JobQueenprotected
get_prelim_larval_job_tracker()protocols::jd3::standard::StandardJobQueenprotected
get_prelim_larval_job_tracker() const protocols::jd3::standard::StandardJobQueenprotected
get_preliminary_larval_jobs() const protocols::jd3::standard::StandardJobQueenprotected
get_preliminary_larval_jobs_determined() const protocols::jd3::standard::StandardJobQueenprotected
has_job_previously_been_output(protocols::jd3::LarvalJobCOP job) overrideprotocols::jd3::standard::StandardJobQueenvirtual
initialize_resources_for_preliminary_job_nodes()protocols::rosetta_scripts::RosettaScriptsJobQueen
job_def_complex_type_name(std::string const &type)protocols::jd3::standard::StandardJobQueenstatic
job_definition_xsd() const overrideprotocols::jd3::standard::StandardJobQueenvirtual
job_results_that_should_be_discarded() overrideprotocols::jd3::standard::StandardJobQueenvirtual
JobQueen()protocols::jd3::JobQueen
jobs_that_should_be_output() overrideprotocols::jd3::standard::StandardJobQueenvirtual
mature_larval_job(protocols::jd3::LarvalJobCOP job, utility::vector1< JobResultCOP > const &input_job_results) overrideprotocols::jd3::standard::StandardJobQueenvirtual
next_batch_of_larval_jobs_for_job_node(JobDAGNodeID job_dag_node_index, core::Size max_njobs)protocols::jd3::standard::StandardJobQueenprotectedvirtual
note_job_completed(LarvalJobCOP job, JobStatus status, core::Size nresults) overrideprotocols::jd3::standard::StandardJobQueenvirtual
note_job_completed_and_track(LarvalJobCOP job, JobStatus status, core::Size nresults)protocols::jd3::JobQueen
note_preliminary_job_node_is_complete(jd3::PrelimJobNodeID pjn_index) overrideprotocols::rosetta_scripts::RosettaScriptsJobQueenvirtual
options_for_job(InnerLarvalJob const &inner_job) const protocols::jd3::standard::StandardJobQueenprotected
options_from_tag(utility::tag::TagCOP job_options_tags) const protocols::jd3::standard::StandardJobQueenprotected
parent typedefprotocols::rosetta_scripts::RosettaScriptsJobQueen
parse_job_definition_tags(utility::tag::TagCOP, utility::vector1< PreliminaryLarvalJob > const &)protocols::jd3::standard::StandardJobQueeninlineprotectedvirtual
parser_protocols::rosetta_scripts::RosettaScriptsJobQueenprivate
pjns_requiring_resources_protocols::rosetta_scripts::RosettaScriptsJobQueenprivate
pose_for_inner_job(InnerLarvalJobCOP inner_job)protocols::jd3::standard::StandardJobQueenprotected
pose_for_inner_job(InnerLarvalJobCOP inner_job, utility::options::OptionCollection const &options)protocols::jd3::standard::StandardJobQueenprotected
pose_for_job(LarvalJobCOP job, utility::options::OptionCollection const &options)protocols::jd3::standard::StandardJobQueenprotected
pose_inputter_for_job(InnerLarvalJob const &inner_job) const protocols::jd3::standard::StandardJobQueenprotected
pose_outputter_for_job(InnerLarvalJob const &innerJob)protocols::jd3::standard::StandardJobQueenprotected
pose_outputter_for_job(InnerLarvalJob const &innerJob, utility::options::OptionCollection const &job_options)protocols::jd3::standard::StandardJobQueenprotected
pose_outputter_for_job(pose_outputters::PoseOutputSpecification const &spec)protocols::jd3::standard::StandardJobQueenprotected
process_deallocation_message(deallocation::DeallocationMessageOP message) overrideprotocols::jd3::standard::StandardJobQueenvirtual
refine_preliminary_job(PreliminaryLarvalJob const &prelim_job)protocols::jd3::standard::StandardJobQueenprotectedvirtual
remove_default_input_element()protocols::jd3::standard::StandardJobQueenprotected
resource_definition_xsd() const overrideprotocols::jd3::standard::StandardJobQueenvirtual
resource_manager()protocols::rosetta_scripts::RosettaScriptsJobQueen
resource_manager_protocols::rosetta_scripts::RosettaScriptsJobQueenprivate
resources_for_pjn_protocols::rosetta_scripts::RosettaScriptsJobQueenprivate
result_outputter(output::OutputSpecification const &spec) overrideprotocols::jd3::standard::StandardJobQueenvirtual
RosettaScriptsJobQueen()protocols::rosetta_scripts::RosettaScriptsJobQueen
secondary_outputters_for_job(InnerLarvalJob const &innerJob, utility::options::OptionCollection const &job_options)protocols::jd3::standard::StandardJobQueenprotected
set_common_block_precedes_job_blocks(bool setting)protocols::jd3::standard::StandardJobQueeninlineprotected
set_default_outputter(pose_outputters::PoseOutputterCreatorOP creator)protocols::jd3::standard::StandardJobQueenprotected
StandardJobQueen()protocols::jd3::standard::StandardJobQueen
update_job_dag(JobDigraphUpdater &updater) overrideprotocols::jd3::standard::StandardJobQueenvirtual
~JobQueen() overrideprotocols::jd3::JobQueen
~RosettaScriptsJobQueen() overrideprotocols::rosetta_scripts::RosettaScriptsJobQueen
~StandardJobQueen() overrideprotocols::jd3::standard::StandardJobQueen
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