core::pack::task::operation::DisallowIfNonnativeRLT Class Reference

#include <ResLvlTaskOperations.hh>

Inheritance diagram for core::pack::task::operation::DisallowIfNonnativeRLT:

Public Types
typedef ResLvlTaskOperation	parent
Public Types inherited from core::pack::task::operation::ResLvlTaskOperation
typedef utility::tag::TagCOP	TagCOP

Public Member Functions
	DisallowIfNonnativeRLT ()
	DisallowIfNonnativeRLT (utility::vector1< bool > disallowed_aas)
	~DisallowIfNonnativeRLT () override
ResLvlTaskOperationOP	clone () const override
	Create another task operation of the type matching the most-derived version of the class. More...
void	apply (ResidueLevelTask &rlt) const override
	Change a ResidueLevelTask in some way. The input pose is the one to which the input task will be later applied. More...
void	clear ()
void	disallow_aas (utility::vector1< bool > const &canonical_disallowed)
void	disallow_aas (std::string const &aa_string)
void	parse_tag (TagCOP) override
	parser xml-like tags to set class data/parameters More...
Public Member Functions inherited from core::pack::task::operation::ResLvlTaskOperation
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	keyname ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Member Functions
utility::vector1< bool >	invert_vector (utility::vector1< bool > disallowed_aas)

Private Attributes
utility::vector1< bool >	disallowed_aas_
utility::vector1< bool >	allowed_aas_

Member Typedef Documentation

typedef ResLvlTaskOperation core::pack::task::operation::DisallowIfNonnativeRLT::parent

Constructor & Destructor Documentation

core::pack::task::operation::DisallowIfNonnativeRLT::DisallowIfNonnativeRLT

(

)

core::pack::task::operation::DisallowIfNonnativeRLT::DisallowIfNonnativeRLT

(

utility::vector1< bool >

disallowed_aas

)

core::pack::task::operation::DisallowIfNonnativeRLT::~DisallowIfNonnativeRLT ( )

overridedefault

Member Function Documentation

void core::pack::task::operation::DisallowIfNonnativeRLT::apply ( ResidueLevelTask &  ) const

overridevirtual

Change a ResidueLevelTask in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::ResLvlTaskOperation.

References allowed_aas_, core::chemical::num_canonical_aas, and core::pack::task::ResidueLevelTask::restrict_nonnative_canonical_aas().

void core::pack::task::operation::DisallowIfNonnativeRLT::clear

(

)

References allowed_aas_, and disallowed_aas_.

ResLvlTaskOperationOP core::pack::task::operation::DisallowIfNonnativeRLT::clone ( ) const

overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::ResLvlTaskOperation.

Referenced by protocols::fold_from_loops::NubInitioMover::repack(), and protocols::fold_from_loops::movers::NubInitioLoopClosureMover::repack().

void core::pack::task::operation::DisallowIfNonnativeRLT::disallow_aas

(

utility::vector1< bool > const &

canonical_disallowed

)

References allowed_aas_, disallowed_aas_, invert_vector(), and core::chemical::num_canonical_aas.

Referenced by parse_tag(), protocols::fold_from_loops::NubInitioMover::repack(), and protocols::fold_from_loops::movers::NubInitioLoopClosureMover::repack().

void core::pack::task::operation::DisallowIfNonnativeRLT::disallow_aas

(

std::string const &

aa_string

)

References core::chemical::aa_from_oneletter_code(), allowed_aas_, disallowed_aas_, invert_vector(), core::chemical::num_canonical_aas, and core::chemical::oneletter_code_specifies_aa().

utility::vector1< bool > core::pack::task::operation::DisallowIfNonnativeRLT::invert_vector ( utility::vector1< bool >  disallowed_aas )

private

Referenced by disallow_aas().

std::string core::pack::task::operation::DisallowIfNonnativeRLT::keyname ( )

static

Referenced by core::pack::task::operation::DisallowIfNonnativeRLTCreator::keyname(), provide_xml_schema(), and core::pack::task::operation::PreventRepackingRLT::provide_xml_schema().

void core::pack::task::operation::DisallowIfNonnativeRLT::parse_tag ( TagCOP  )

overridevirtual

parser xml-like tags to set class data/parameters

Reimplemented from core::pack::task::operation::ResLvlTaskOperation.

References disallow_aas().

void core::pack::task::operation::DisallowIfNonnativeRLT::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References keyname(), and core::pack::task::operation::res_lvl_task_op_schema_w_attributes().

Referenced by core::pack::task::operation::DisallowIfNonnativeRLTCreator::provide_xml_schema().

Member Data Documentation

utility::vector1< bool > core::pack::task::operation::DisallowIfNonnativeRLT::allowed_aas_

private

Referenced by apply(), clear(), and disallow_aas().

utility::vector1< bool > core::pack::task::operation::DisallowIfNonnativeRLT::disallowed_aas_

private

Referenced by clear(), and disallow_aas().

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The documentation for this class was generated from the following files:

• src/core/pack/task/operation/ResLvlTaskOperations.hh
• src/core/pack/task/operation/ResLvlTaskOperations.cc