#include <StubScoreFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::StubScoreFilter:

Public Member Functions
	StubScoreFilter ()
	default ctor More...

bool	apply (core::pose::Pose const &pose) const override
	Constructor with a single target residue. More...

void	report (std::ostream &out, core::pose::Pose const &pose) const override

core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...

protocols::filters::FilterOP	clone () const override

protocols::filters::FilterOP	fresh_instance () const override

core::Real	compute (core::pose::Pose const &pose) const

	~StubScoreFilter () override

void	stub_sets (utility::vector1< StubSetStubPos > const &stub_sets)

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...

std::string	name () const override

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

	~Filter () override

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Types
typedef protocols::filters::Filter	parent

typedef std::pair < protocols::hotspot_hashing::HotspotStubSetOP, std::pair < protocols::hotspot_hashing::HotspotStubOP, core::Size > >	StubSetStubPos

Private Attributes
utility::vector1< StubSetStubPos >	stub_sets_

core::pose::PoseCOP	reference_pose_

core::Size	host_chain_

core::Real	cb_force_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef protocols::filters::Filter protocols::protein_interface_design::filters::StubScoreFilter::parent

private

typedef std::pair< protocols::hotspot_hashing::HotspotStubSetOP, std::pair< protocols::hotspot_hashing::HotspotStubOP, core::Size > > protocols::protein_interface_design::filters::StubScoreFilter::StubSetStubPos

private

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::StubScoreFilter::StubScoreFilter ( )

default ctor

protocols::protein_interface_design::filters::StubScoreFilter::~StubScoreFilter ( )

overridedefault

Member Function Documentation

bool protocols::protein_interface_design::filters::StubScoreFilter::apply ( core::pose::Pose const & pose ) const

overridevirtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

References compute(), and protocols::protein_interface_design::filters::TR().

std::string protocols::protein_interface_design::filters::StubScoreFilter::class_name ( )

static

Referenced by protocols::protein_interface_design::filters::StubScoreFilterCreator::keyname(), name(), parse_my_tag(), and provide_xml_schema().

protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreFilter::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

core::Real protocols::protein_interface_design::filters::StubScoreFilter::compute ( core::pose::Pose const & pose ) const

References core::scoring::backbone_stub_constraint, protocols::protein_interface_design::movers::PlacementMinimizationMover::cb_force(), cb_force_, protocols::score_filters::ScoreTypeFilter::compute(), protocols::protein_interface_design::movers::PlacementMinimizationMover::host_chain(), host_chain_, protocols::protein_interface_design::movers::make_stub_scorefxn(), reference_pose_, protocols::protein_interface_design::movers::PlacementMinimizationMover::refresh_bbstub_constraints(), protocols::hotspot_hashing::remove_hotspot_constraints_from_pose(), protocols::protein_interface_design::movers::PlacementMinimizationMover::set_reference_pose(), protocols::protein_interface_design::movers::PlacementMinimizationMover::stub_sets(), stub_sets_, and protocols::protein_interface_design::filters::TR().

Referenced by apply(), report(), and report_sm().

protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreFilter::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

std::string protocols::protein_interface_design::filters::StubScoreFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::protein_interface_design::filters::StubScoreFilter::parse_my_tag	(	utility::tag::TagCOP	,
		basic::datacache::DataMap &
	)

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References cb_force_, class_name(), host_chain_, protocols::rosetta_scripts::legacy_saved_pose_or_input(), protocols::protein_interface_design::movers::parse_stub_sets(), reference_pose_, stub_sets_, and protocols::protein_interface_design::filters::TR().

void protocols::protein_interface_design::filters::StubScoreFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References protocols::protein_interface_design::movers::add_subelement_for_parse_stub_sets(), core::pose::attributes_for_saved_reference_pose_w_description(), class_name(), and protocols::filters::xsd_type_definition_w_attributes_and_repeatable_subelements().

Referenced by protocols::protein_interface_design::filters::StubScoreFilterCreator::provide_xml_schema().

void protocols::protein_interface_design::filters::StubScoreFilter::report	(	std::ostream &	out,
		core::pose::Pose const &	pose
	)		const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::protein_interface_design::filters::StubScoreFilter::report_sm ( core::pose::Pose const & ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

void protocols::protein_interface_design::filters::StubScoreFilter::stub_sets ( utility::vector1< StubSetStubPos > const & stub_sets )

References stub_sets_.

Member Data Documentation

core::Real protocols::protein_interface_design::filters::StubScoreFilter::cb_force_

private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::StubScoreFilter::host_chain_

private

Referenced by compute(), and parse_my_tag().

core::pose::PoseCOP protocols::protein_interface_design::filters::StubScoreFilter::reference_pose_

private

Referenced by compute(), and parse_my_tag().

utility::vector1< StubSetStubPos > protocols::protein_interface_design::filters::StubScoreFilter::stub_sets_

private

Referenced by compute(), parse_my_tag(), and stub_sets().

The documentation for this class was generated from the following files:

src/protocols/protein_interface_design/filters/StubScoreFilter.hh
src/protocols/protein_interface_design/filters/StubScoreFilter.cc

Public Member Functions

Static Public Member Functions

Private Types

Private Attributes

Additional Inherited Members

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation