| analyze_trajectory(utility::vector1< ChiInfo > const &chitrj, core::pose::Pose const &pose, utility::vector1< std::pair< core::Size, core::Size > > const &chidefs, core::Real const Emin, core::Real const RT, bool const run_on_ligand, bool const run_on_receptor) const | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| apply(core::pose::Pose const &pose) const | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | |
| chimapping_ | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| chis2rotid(utility::vector1< core::Real > const &chis) const | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| chiweights_ | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| EntropyEstimator(core::scoring::ScoreFunctionOP sfxn, core::pose::Pose const &pose, utility::vector1< core::Size > const &ligids) | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | |
| estimate_Stors(core::pose::Pose pose, utility::vector1< ChiInfo > &chitrj, utility::vector1< core::Size > const &flexscs, utility::vector1< std::pair< core::Size, core::Size > > const &chidefs, bool const run_on_ligand, bool const run_on_receptor) const | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| get_chi_weight(core::pose::Pose const &pose_ref) | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| get_contacting_reslist(core::pose::Pose const &pose, utility::vector1< std::pair< core::Size, core::Size > > &chidefs) const | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| get_temperature(core::Size const it) const | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| iter_collect_begin_ | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| jumpid_ | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| ligids_ | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| ligpose_chimapping_ | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| maxpert_ | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| minimize_ | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| niter_ | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| P_randomize_ | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| perturb(core::pose::Pose &pose, core::Size const nligchi, utility::vector1< core::Size > const &flexscs, bool &pert_ligand) const | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| run_apostate_ | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| run_holostate_ | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| sample_every_iter_ | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| set_niter(core::Size setting) | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | inline |
| setup_trj(core::pose::Pose const &pose, utility::vector1< core::Size > &flexscs, utility::vector1< std::pair< core::Size, core::Size > > &chidefs) const | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| sfxn_ | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| temp_f_ | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| temp_i_ | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| update_chis(core::pose::Pose const &pose, utility::vector1< core::Real > &chis, bool const &ligonly) const | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| update_flexscs(core::pose::Pose const &pose, utility::vector1< std::pair< core::Size, core::Size > > const &chidefs, std::map< core::Size, utility::vector1< core::Real > > &chis) const | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| weighted_ | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| wRG_ | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| wtors_ | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | private |
| ~EntropyEstimator() | protocols::ligand_docking::ga_ligand_dock::EntropyEstimator | inline |
1.8.7